LOCUS       NM_001415920            1644 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 24 member 5 (Slc24a5),
            mRNA.
ACCESSION   NM_001415920 XM_039104987
VERSION     NM_001415920.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ginger,R.S., Askew,S.E., Ogborne,R.M., Wilson,S., Ferdinando,D.,
            Dadd,T., Smith,A.M., Kazi,S., Szerencsei,R.T., Winkfein,R.J.,
            Schnetkamp,P.P. and Green,M.R.
  TITLE     SLC24A5 encodes a trans-Golgi network protein with
            potassium-dependent sodium-calcium exchange activity that regulates
            human epidermal melanogenesis
  JOURNAL   J Biol Chem 283 (9), 5486-5495 (2008)
   PUBMED   18166528
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 5, 2023 this sequence version replaced XM_039104987.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.4670.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476, SAMN06680412
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               JAXUCZ010000003.1  132772804-132772949
            147-332             JAXUCZ010000003.1  132773416-132773601
            333-416             JAXUCZ010000003.1  132784717-132784800
            417-520             JAXUCZ010000003.1  132784889-132784992
            521-621             JAXUCZ010000003.1  132785324-132785424
            622-905             JAXUCZ010000003.1  132787036-132787319
            906-1112            JAXUCZ010000003.1  132789558-132789764
            1113-1214           JAXUCZ010000003.1  132791374-132791475
            1215-1644           JAXUCZ010000003.1  132791913-132792342
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..1644
                     /gene="Slc24a5"
                     /note="solute carrier family 24 member 5"
                     /db_xref="GeneID:311387"
                     /db_xref="RGD:1310565"
     exon            1..146
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1537
                     /gene="Slc24a5"
                     /note="solute carrier family 24 (sodium/potassium/calcium
                     exchanger), member 5"
                     /codon_start=1
                     /product="sodium/potassium/calcium exchanger 5 precursor"
                     /protein_id="NP_001402849.1"
                     /db_xref="GeneID:311387"
                     /db_xref="RGD:1310565"
                     /translation="MRTKWGPTWTRRVLRLGIFWVSAYLPVRGVFLPPRLPRATVGNS
                     TQCAVSPASSEFPEGFFTKQESTDGGIVIYFLITLYMFMAVSIVCDKYFLPSLEIISD
                     SLGLSQDVAGATFMAAGSSAPELVTAFLGVFITKGDIGISTILGSAIYNLLGICAACG
                     LLSNMVSTLSCWPLFRDCAVYAVSVGAVFGIIFDNRVYWYEGALLLLIYGLYVLLLCF
                     DTTISRYVTKTCRPCCPCLAKAMEERSEQQTLLGWENESQIYIRRQSRTDSGIFQEDS
                     GYSQLSLSLHGLSQVSEDPPSVFSMPEADLRRIFWVLSLPVITLLALTTPDCRRKLWK
                     NYFVITFFMSAFWISAFTYVLVWMVTITGETLGIPDTVMGLTLLAAGTSIPDTVASVL
                     VARKGKGDMAISNIVGSNVFDMLCLGLPWFIKTAFTNASAPIEVNSKGLTYITISLNI
                     SIFLLFLAVHFNGWKLDRKLGVVCLVSYLGLATLSVLYELGIIGNNRVRGCGI"
     exon            147..332
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            333..416
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            417..520
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            521..621
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            622..905
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1112
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1214
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
     exon            1215..1644
                     /gene="Slc24a5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacactgcc aagagcacgc tggaaatgcg gacaaaatgg ggcccaactt ggacaagaag
       61 ggtcctgcgg ctggggatct tctgggtctc tgcatacctg cctgtccgtg gtgttttcct
      121 gcccccgcgc ctcccaaggg ccacagtggg aaacagcacg caatgtgctg tctctccggc
      181 atcgtcggag tttcccgaag ggttcttcac caagcaggag agcacagacg gaggcatcgt
      241 aatctacttc ctcattaccc tctacatgtt catggcggtc tctatcgtct gtgacaagta
      301 cttcctgccc tccctggaaa tcatcagtga ctcccttgga ctgtcgcagg atgttgcagg
      361 tgcgactttc atggcagcag gtagctcggc ccctgaacta gtcaccgcct tcttgggtgt
      421 atttatcaca aagggagata ttggtatcag caccattcta ggatctgcaa tttataatct
      481 cctcggcatc tgtgctgcct gcggcctcct ctccaacatg gtttcaacgc tctcgtgctg
      541 gcccctgttc cgtgattgtg ctgtgtatgc agttagtgtg ggagcagttt ttggcataat
      601 atttgacaac cgagtttact ggtacgaagg agcactgctg ctgctgatat acgggctgta
      661 tgtcctgctg ctgtgttttg acactacgat cagtcgatat gtcacgaaaa catgcaggcc
      721 ctgttgtccc tgccttgcca aagccatgga ggagagaagt gaacagcaga cactgctggg
      781 gtgggagaat gagagccaaa tctacattcg tcgccagtca aggactgaca gcgggatatt
      841 tcaggaagat tctggttact cccaactttc tctaagttta catggtctta gtcaggtttc
      901 tgaagatcca ccaagtgttt tcagcatgcc agaagcagat ttaagaagaa ttttttgggt
      961 tctctctctt cctgttatta cgttacttgc tctgacaacc ccggactgca ggagaaagtt
     1021 gtggaaaaac tactttgtga taaccttctt catgtctgca ttctggatct ctgcattcac
     1081 atacgtgctg gtttggatgg tcacaataac aggggaaaca ctaggaatcc cagacacagt
     1141 gatgggcctt actttgttgg cagcagggac cagcatacca gacacagtcg cgagtgtgtt
     1201 agttgcaaga aaaggtaaag gagacatggc tatatctaac atcgtgggat ccaatgtgtt
     1261 tgatatgcta tgccttggtc ttccctggtt tattaagact gcatttacga atgcatctgc
     1321 tcctatagaa gtgaacagca agggactcac ttatataacc atctctctca acatttcaat
     1381 ctttcttctg ttcttagcgg ttcattttaa cggctggaaa ctagaccgaa agttgggggt
     1441 ggtctgccta gtgtcatact taggacttgc tactttatca gtactatatg aacttggaat
     1501 cattggaaat aacagagtaa ggggctgtgg aatttgatat ttttaataat gttatgtgga
     1561 acaactggaa tgatagaggg gcaaaaaaat tcatgtcttc atttaggtca aattaaaaaa
     1621 aaaatcttca actttagagt gtaa
//
