LOCUS       NM_001412878            3514 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 13 member 4 (Slc13a4),
            mRNA.
ACCESSION   NM_001412878 XM_006236283
VERSION     NM_001412878.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Dawson,P.A., Pirlo,K.J., Steane,S.E., Kunzelmann,K., Chien,Y.J. and
            Markovich,D.
  TITLE     Molecular cloning and characterization of the mouse Na+ sulfate
            cotransporter gene (Slc13a4): Structure and expression
  JOURNAL   Genes Genet Syst 81 (4), 265-272 (2006)
   PUBMED   17038798
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Dawson,P.A., Pirlo,K.J., Steane,S.E., Nguyen,K.A., Kunzelmann,K.,
            Chien,Y.J. and Markovich,D.
  TITLE     The rat Na+-sulfate cotransporter rNaS2: functional
            characterization, tissue distribution, and gene (slc13a4) structure
  JOURNAL   Pflugers Arch 450 (4), 262-268 (2005)
   PUBMED   15889308
  REMARK    GeneRIF: This gene produces two alternatively spliced transcripts,
            of which the transcript lacking exon 2 is the most abundant form.
            Its 5' flanking region contains CAAT- and GC-box motifs and a
            number of putative transcription factor binding sites.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 20, 2022 this sequence version replaced XM_006236283.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ212433.1, SRR26360172.1084608.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-783               JAXUCZ010000004.1  64955204-64955986   c
            784-912             JAXUCZ010000004.1  64950112-64950240   c
            913-1049            JAXUCZ010000004.1  64938064-64938200   c
            1050-1222           JAXUCZ010000004.1  64936140-64936312   c
            1223-1277           JAXUCZ010000004.1  64935674-64935728   c
            1278-1317           JAXUCZ010000004.1  64933378-64933417   c
            1318-1398           JAXUCZ010000004.1  64932324-64932404   c
            1399-1586           JAXUCZ010000004.1  64929310-64929497   c
            1587-1706           JAXUCZ010000004.1  64928300-64928419   c
            1707-1808           JAXUCZ010000004.1  64927165-64927266   c
            1809-1910           JAXUCZ010000004.1  64925474-64925575   c
            1911-2008           JAXUCZ010000004.1  64924694-64924791   c
            2009-2133           JAXUCZ010000004.1  64923984-64924108   c
            2134-2295           JAXUCZ010000004.1  64914312-64914473   c
            2296-2433           JAXUCZ010000004.1  64912988-64913125   c
            2434-3514           JAXUCZ010000004.1  64910507-64911587   c
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..3514
                     /gene="Slc13a4"
                     /note="solute carrier family 13 member 4"
                     /db_xref="GeneID:503568"
                     /db_xref="RGD:1359715"
     exon            1..783
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     CDS             685..2571
                     /gene="Slc13a4"
                     /note="sodium sulfate cotransporter-2; solute carrier
                     family 13 (sodium/sulfate symporter), member 4; solute
                     carrier family 13 (sodium/sulfate symporters), member 4"
                     /codon_start=1
                     /product="solute carrier family 13 member 4"
                     /protein_id="NP_001399807.1"
                     /db_xref="GeneID:503568"
                     /db_xref="RGD:1359715"
                     /translation="MGLLQGLLQARKLLLVICVPLLLLPLPTIYPTSEAACAYVLLVT
                     AVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAAEYFKNTTLLLVGVICVAAAVEKW
                     NLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIVEAVLQELIN
                     AEEEQLVAGNSSTEEAELMGVDVSNRQTSVELIFVNEDTSAADFTSLMQNKNLNGVPM
                     VTKSIKTANQQQQKKQHQSQEKPGVPTPSSKNQELNKKKYRSHHDQMVCKCLSLSISY
                     AATIGGLTTIIGTSTSLIFLEHFNNQYPAAEVVNFGTWFLFSFPISLIMLVVSWFWMH
                     WLFLGCNFKETCSLSKKKKTRREELSERRIREEYEKLGDISYPEMVTAFFFILMTVLW
                     FTREPGFVPGWDSFFEKKGYRTDATVSVFLGFLLFLIPAKKPCFGKKSDGAGQEASRG
                     IEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIGHQMLSLSSLPPWAITL
                     LACVLVSIVTEFVSNPATITIFLPILCTLSETLHINPLYTLVPVTMSISFAVMLPVGN
                     PPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLDTFPAWAKVGNI
                     TDQT"
     exon            784..912
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1049
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1222
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1277
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1317
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1398
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1586
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1706
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1808
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1809..1910
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2008
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2133
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            2134..2295
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            2296..2433
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
     exon            2434..3514
                     /gene="Slc13a4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtaacaaaa aggaatgtct tggggattct tcacggctgc tttggaagtc cagacttcag
       61 gaaaactata agtaggagct taatttgaag ggaagaaatc taaacagagt taaggtgtca
      121 ggtactgaga gagagcgccc tcactcccag tctgaggtct acatatacct cagactaacg
      181 cccgtgctgg ctttaaggga aggggccacc agatttttac caacagtcag ccaggtcaga
      241 ggtaaaacag cagctgcccc cagacaggtc accagaaaag aagaaaagct cctggttttc
      301 ttttttttaa gttttaagtg attcttcagt gctgaccagc agcctcaagc ccgttgcttg
      361 tgaggacttt ttctggcgtg tagaatgaag ccaccctctt gttaacccca gagggcaaac
      421 ccaccgctcg ggtgcatact ccttttccag ctccttttcg atggccatca cactatgctg
      481 ctcaatccca cctaaggcaa aaggcaagga gcccagcttt ctgtggaaac tgggtacaga
      541 caccctgttt ttctgctccc gagaccaaag aggactaact cttggaagcc aggaaaggta
      601 taaggagtct tcctggactg agatcgaagc ctagtgccga gcagaggaga acgctttcaa
      661 ggactcgatc cagacaggtc caccatgggc ttgctgcagg gccttctcca agcaagaaag
      721 ctgctattgg tcatctgtgt gccgctgctg ctgctgcccc tgcccactat ctaccccacc
      781 agcgaggctg cgtgtgctta cgtgctgctt gtgaccgctg tgtactgggt gtccgaggcg
      841 gtgcctcttg gagctgcagc cctcgtgcct gccttcctct acccgttctt cggcgttctc
      901 cgatccagtg aggtagcggc tgagtacttc aagaacacaa cgctgctgtt ggtgggtgtc
      961 atctgcgtgg cagcagctgt ggagaaatgg aatttacaca agcgcatcgc cctgcgtatg
     1021 gtcttgatgg ccggagccaa gcctggcatg ttactgctgt gcttcatgtg ctgtaccacc
     1081 atgctgtcca tgtggctctc caacacctcc accaccgcca tggtgatgcc catcgtggag
     1141 gccgtgctgc aggagctgat caacgctgag gaggaacagt tggtggcggg caactccagc
     1201 actgaggagg ctgagctcat gggtgtggac gtaagcaaca gacaaacttc tgtagaactc
     1261 atctttgtca acgaagacac gtcggctgca gacttcactt ctctgatgca gaacaagaat
     1321 ctgaatggtg tgcccatggt caccaagtcc atcaaaacag caaaccaaca gcaacagaag
     1381 aagcagcatc aatcacagga aaaaccggga gtcccgaccc ccagctccaa gaaccaagaa
     1441 ctgaacaaga agaagtacag atcccaccat gaccaaatgg tctgcaagtg cctctctctg
     1501 agcatatctt acgctgccac cattggcggc ctgaccacca tcataggcac ctccaccagc
     1561 ctcattttct tagagcattt caacaaccag tatccggcgg cagaggtggt gaacttcggg
     1621 acctggttcc tcttcagctt ccccatctct ctcatcatgc tggtggtcag ctggttctgg
     1681 atgcattggc tcttcctggg ctgcaacttt aaagagacct gctctctgag caagaagaag
     1741 aagaccagga gggaggagct gtcagagagg aggatccggg aggaatatga aaaactggga
     1801 gacattagct accctgaaat ggtgaccgca tttttcttca tcctgatgac agtgctgtgg
     1861 tttacccggg agcccggctt tgtccctggc tgggattctt tctttgaaaa gaaaggctac
     1921 cgcacggacg ccaccgtctc tgtgttcctt ggtttcctgc tcttcctcat cccagcgaag
     1981 aagccctgct ttgggaagaa gagtgacgga gcaggccagg aagcctcccg ggggatagag
     2041 cccatcatca cgtggaagga cttccagaaa actatgccct gggagattgt catcctagtg
     2101 ggaggaggct atgccctggc ttcgggcagc aagagctctg gcctctcaac atggattggg
     2161 caccagatgc tgtccctgag cagcctccca ccatgggcta tcactctgct ggcatgcgtc
     2221 ctggtgtcca ttgtcacaga gtttgtcagc aatccagcca ccatcaccat cttcctgccc
     2281 atcctatgta ccctgtccga aacactgcac atcaatccac tgtacaccct ggtcccggtt
     2341 accatgtcta tctcctttgc tgtaatgctg cctgtgggca atccccccaa tgctatcgtc
     2401 ttcagctatg ggcactgcca gatcaaagac atggtgaaag ctggcctagg ggtcaatgtc
     2461 atcggcctgg tgatagtgat ggtggccatc aatacttggg gagttagtct cttccacttg
     2521 gacactttcc cagcctgggc taaggtcggc aacatcactg atcagaccta acaggagcgg
     2581 acagtgacct agcacaacca gagctgaccc atggaccaag aagaccacca ggtgcacaca
     2641 ccccagactc acatggagga ttttcctgct accagattcc tccacccgcc ataggcgtgt
     2701 tggctgtgtc tccctcccag cctgcctgct tcccttacca ccagctctca agaaagacta
     2761 cagctgctct ctcttcctgt gtccagccct aactcttttt gaagaccaga aacactgcaa
     2821 gccttagtgc cctgagggga agcctcagaa actggctggc ctcactaggt tttgcgttac
     2881 cagtcatacc tttctaggac tcagagccag ccagatcact ctgcctgtgc agatcatgag
     2941 gcctgtgacc tctcttctgg gagagagcct tacctgtcct caagcatttc tatccggtct
     3001 ctagagaaag gtaacctcgg atcctaaggc ttaggaggtc ctcctgtggc aggcaatctg
     3061 tgcttttgcc agtcttatct gtcttaaatc tctcttcagt ggtccctcta cctcggcgcc
     3121 aaattccgta aagaaataat attctccttc aaaaagaggc tggcccgatt ccaccgaagg
     3181 aaagagatgg aaaaaaacaa acaaaccatc ctgaagtcag cttctccatg tactgtcaca
     3241 atgagagact caattgcctc gtgagtgtgg tggagggagg aaaaagggtt catacctgcc
     3301 tcattaggaa gagcagaact atggttaaga ccacagtgga ctggatgtta cactcacttc
     3361 tccacttaat agctagtttg tttctgagaa caccagagtg tcttgccagt gtttcctaca
     3421 cgtccacggg ccctttgagg ggaagatgtg cctggggttc tttacaatgt attaaactct
     3481 aagtgctcaa taaatgtctc tgatgactgc tgca
//
