LOCUS       XM_039092440            1818 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stem-loop binding protein (Slbp),
            transcript variant X1, mRNA.
ACCESSION   XM_039092440
VERSION     XM_039092440.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1818
                     /gene="Slbp"
                     /note="stem-loop binding protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 2 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 191 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:681062"
                     /db_xref="RGD:1584682"
     CDS             305..1027
                     /gene="Slbp"
                     /codon_start=1
                     /product="histone RNA hairpin-binding protein isoform X1"
                     /protein_id="XP_038948368.1"
                     /db_xref="GeneID:681062"
                     /db_xref="RGD:1584682"
                     /translation="MACRPRSPPRYGSRRDGGASPRSPARWSLGRKRRADGRDRKPED
                     SEEGELQTADHRPERYKRKLLINDFGRERKSSSGSSDSKESVSSVPADVETDESVLMR
                     RQKQINYGKNTMAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIKLWKVALH
                     FWDPPAEEGCDLQEIQPVDLGEMETEFTESSSESQTSSQDNFDVYAGTPTKVRHVDCQ
                     VEDEFDLEACLTEPLKDFSAMS"
ORIGIN      
        1 gtcggggtat cccatttttc ccgcccttct ggacggctgc gtaaggcgtt ggggtttagc
       61 gactgcctgc agttctgagg cttaggtcgg aaccgggtcc gtcagccggg cgcgcagagc
      121 cgagaagggc tcccccacag gtgcaggtcc ggtggtttcg tccggccccg cgcgcgcgcg
      181 ggagttattg aggggcgggg ccctgcgcac ttaagggcgg ttgggctagg caggctcaga
      241 cctcttctgt gctgtcgctg ggtgaggttc ctgctggtga gctctccttc aaaccaccgc
      301 cgccatggcc tgcagaccta gaagcccacc ccgttacggg agtcgccgcg acggcggtgc
      361 gagcccgcgg tctcctgcgc gatggagtct cggacggaag cgcagagcgg acggaagaga
      421 ccggaagcct gaggactccg aggaaggcga gctccagact gcagaccatc gacctgaaag
      481 gtacaaaaga aagctactca taaatgactt tggaagagag agaaaatcgt catcaggaag
      541 ttctgattca aaggagtctg tgtcttcagt gcctgctgac gtggagacag atgaaagtgt
      601 cttgatgaga aggcagaagc agatcaacta tgggaagaac actatggcct atgatcgata
      661 cattaaagag gtgcccagac acctgcgaca gcctggaatc catcccagga cccccaacaa
      721 atttaagaag tatagccggc ggtcatggga ccagcagatc aaactctgga aggtggcttt
      781 gcatttttgg gatcctcctg ctgaagaagg gtgtgatttg caagaaatac aacctgtaga
      841 tcttggggaa atggagacag aattcacaga aagcagctct gagtcccaga caagttcaca
      901 ggataacttt gatgtatatg ctggcacacc caccaaagtc agacatgtgg actgccaagt
      961 ggaggacgag tttgatttgg aagcttgttt aactgaacct ttgaaagact tctctgccat
     1021 gagttaactg ccccctggtg gttactctga gaaatacttg gctctgcctg gctgcctgga
     1081 aggcatgagt tgctgtgcat ttgtatttgt tttctctgtt aagaatttat tttctcatga
     1141 taaatagttt ttcttgcctt atttttatgt atggtgaatg tgttacgcat gttttaaatt
     1201 gtaaatgaag ctgaatccag tgaagactta accctattac ctttctgcct cctaagttag
     1261 acaacaggat gcgtgtggtt ttctaccaga acttgggact ccagctacca cgtttcaaat
     1321 gggttggcca cggattttaa ccgtgtgttt atgggaccaa tttagaattg gctgcccttt
     1381 aggtaactga tgaagaattc tcagtcaggc agctgcagtg actttgtaaa aacttatttt
     1441 ctggtctttt atcaatgtga atgtagcttt ccctcataca gagctctgag caaagatgtt
     1501 aagctgttat attaatgggc ttttatgtaa gttatatagt tttaatttgg aacttgaaat
     1561 agcattagtg tgaggtaagt attttagtaa atgctctgtg agttgatgca gaagagagga
     1621 agagagggat ttagaaagaa ctttgttttt tttttttttt tttaatgatc agttaattta
     1681 ccatgtaata ttgctgtaaa tgatgtgtac agataactct gttcatgtat tcaattgtaa
     1741 acttgtcaat atttgcattt ctattgcttt tgtatggaat gataattgca aaaataaaga
     1801 tgctttaact gattataa
//
