LOCUS       NM_001191932            1635 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SLAM family member 6 (Slamf6), mRNA.
ACCESSION   NM_001191932 XM_573514
VERSION     NM_001191932.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Chatterjee,M., Rauen,T., Kis-Toth,K., Kyttaris,V.C., Hedrich,C.M.,
            Terhorst,C. and Tsokos,G.C.
  TITLE     Increased expression of SLAM receptors SLAMF3 and SLAMF6 in
            systemic lupus erythematosus T lymphocytes promotes Th17
            differentiation
  JOURNAL   J Immunol 188 (3), 1206-1212 (2012)
   PUBMED   22184727
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   3  (bases 1 to 1635)
  AUTHORS   Griewank,K., Borowski,C., Rietdijk,S., Wang,N., Julien,A.,
            Wei,D.G., Mamchak,A.A., Terhorst,C. and Bendelac,A.
  TITLE     Homotypic interactions mediated by Slamf1 and Slamf6 receptors
            control NKT cell lineage development
  JOURNAL   Immunity 27 (5), 751-762 (2007)
   PUBMED   18031695
REFERENCE   4  (bases 1 to 1635)
  AUTHORS   Eissmann,P. and Watzl,C.
  TITLE     Molecular analysis of NTB-A signaling: a role for EAT-2 in
            NTB-A-mediated activation of human NK cells
  JOURNAL   J Immunol 177 (5), 3170-3177 (2006)
   PUBMED   16920955
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Jul 17, 2010 this sequence version replaced XM_573514.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.16644.1,
                                           SRR26643292.50134.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000013.1  86916956-86917040
            86-433              JAXUCZ010000013.1  86929790-86930137
            434-697             JAXUCZ010000013.1  86932117-86932380
            698-814             JAXUCZ010000013.1  86932795-86932911
            815-844             JAXUCZ010000013.1  86933244-86933273
            845-918             JAXUCZ010000013.1  86934224-86934297
            919-990             JAXUCZ010000013.1  86936154-86936225
            991-1635            JAXUCZ010000013.1  86937053-86937697
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..1635
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /note="SLAM family member 6"
                     /db_xref="GeneID:498287"
                     /db_xref="RGD:1561848"
     CDS             1..1032
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /codon_start=1
                     /product="SLAM family member 6 precursor"
                     /protein_id="NP_001178861.1"
                     /db_xref="GeneID:498287"
                     /db_xref="RGD:1561848"
                     /translation="MAVSRAPAHDSARQRMVWLFPLVFCLGTGSDVPQSSSNPRLMNG
                     ILGESIVLPLELPAGKIASVIVWSHKEALQGTIMFIIQLKEPEKPNIINANREKEKRL
                     NITQSYSLQLNNLTMADTGSYTAQITTEDTEPTIFRYTLRVFERLSNLEIANHTLLLE
                     NGTCQMYLACTVKNSNQTVSFEWQTTGNISLREPNVTISWDPRNSSNQTYICRAENAV
                     SNLSVSVSTQSLCKDLTNQPWTKAQLTAIISIPMVVVIPVFLYMCIYLWKRRRGSLPL
                     TRQHPDSSQSSDTPGSPGNTVYAQVSHPMQEMKIQNPIKNDSMTIYSIVNHSREPVSP
                     RLNTLKDIK"
     exon            1..85
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            86..433
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            434..697
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            698..814
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            815..844
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            845..918
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            919..990
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1635
                     /gene="Slamf6"
                     /gene_synonym="RGD1561848"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggctgtct caagggctcc agcacacgac tcggctcgtc agaggatggt ctggctgttt
       61 ccacttgtct tctgcctcgg cacagggagt gatgttccac aaagcagctc aaacccccga
      121 ctcatgaatg gcattctagg ggagtctata gttcttcctc tagagcttcc agcaggaaag
      181 atagccagcg tcatcgtctg gagtcacaaa gaagcattgc agggcactat aatgttcatc
      241 atccaactaa aggagcccga aaagccaaat atcattaacg ctaatcgaga gaaggagaag
      301 agactgaata tcacccagtc ctactccttg caactcaaca accttacaat ggccgacacg
      361 gggtcataca ctgcacagat aaccacagaa gacactgaac cgaccatctt cagatatact
      421 ctgagggtct ttgaacgact aagtaactta gaaattgcca accatactct cctgctagag
      481 aatggcacct gccagatgta cctggcctgc actgtgaaaa attcaaatca gactgtctca
      541 ttcgagtggc aaaccacggg aaacatctct ttaagggaac caaatgtcac tatctcttgg
      601 gacccgagga attccagcaa ccagacttac atctgcagag ccgagaatgc tgtcagcaat
      661 ttgtcggtct ctgtctctac ccagagtctc tgcaaagatt taactaatca accctggact
      721 aaagcacagc ttacagctat aatttcaata cccatggttg tagttattcc cgtctttctg
      781 tacatgtgca tatatctttg gaagagaaga agaggttctc ttcctctgac tcgccaacat
      841 ccagattcct cccagagctc agatactccc ggctctcctg ggaacacagt gtatgcacaa
      901 gtcagtcacc cgatgcagga aatgaaaatc caaaatccta taaaaaatga ctccatgaca
      961 atttactcca tagttaatca ctccagagag cccgtttctc ctaggctgaa tactcttaag
     1021 gacatcaagt aagttggtga aagactttaa agaaagccaa gcagaacaca cctcctgatc
     1081 ccttggaaga gcacagaaaa gaagcctgtt ttccaaccgg caatgggatc cagataccca
     1141 gggtgatcac ttcagacttg atcctccata cacatgtcag acgcttcagg agtggcagga
     1201 tctgtagaga cataacccca aaattgcttt ccaatcaaat ccaggacaaa tcctgctttg
     1261 gataacatac ccacgtgctg cttcctctct gataactaaa cgatcagact ttcgatggac
     1321 agatcatgat tcagcaagga attgtttctc ctctagaagg cagcaggatg cgattggctt
     1381 gtagaaagag catggtgttt ggctaaatgt gtagcatctg gcattggatg ggcccacaca
     1441 catgccctga caaatcattt acttagacag gcctcctggg gtaattccta tgttcttgga
     1501 cttttaatct catagccaag aataagagga ggatagcgat acaccggttc cattgctcac
     1561 accaggaatc taagccatac ctgactacgg tttaatcacc aagcacttga gactctacct
     1621 ccaaaatata ttaaa
//
