LOCUS       XM_039097333            4146 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SKI family transcriptional corepressor
            2 (Skor2), mRNA.
ACCESSION   XM_039097333
VERSION     XM_039097333.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097333.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4146
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4146
                     /gene="Skor2"
                     /note="SKI family transcriptional corepressor 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 3 Proteins, and 95% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:681200"
                     /db_xref="RGD:1598071"
     CDS             59..3085
                     /gene="Skor2"
                     /codon_start=1
                     /product="SKI family transcriptional corepressor 2"
                     /protein_id="XP_038953261.1"
                     /db_xref="GeneID:681200"
                     /db_xref="RGD:1598071"
                     /translation="MASSPLPGPNDILLASPSSAFQPDALSQPRPGHANLKPNQVGQV
                     ILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEIL
                     RRAGAMPISSRRCGMITKREAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFI
                     PARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDK
                     SPQDELVFAWEDVKAMFNGGSRKRALPQPSAHPACHPLSSVKAAAVAAAAAVAGGGGL
                     LGPHLLGAPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAAS
                     LSVAAATGGAGPGAGGPGGGCVAGVGVGATAGAGAAAGTKGPRSYPVIPVPSKGSFGG
                     VLQKFPGCGGLFPHPYTFPAAAAAFGLCHKKEDAGTAAEALGGAGAGSAGAAPKAGLS
                     GLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGDSPALLRQA
                     FLDLAEPGGAGGSAEAAPPPGQPPPVVANGPGSGPPATGGTGSRDTLFESPPGGSGGD
                     CSAGSTPPAEPGVTSGNGATSSGAGSVGTRVPAPHHPHLLEGRKAGGGSYHHSSAFRP
                     VGGKDDSESLAKLHGASAGAPHSAPAHHHHHHHHPHHHHHHPPQPPSPLLLLQPQPDE
                     PGSERHHPAPPPPPPPPPLAPQPHHRGLLSPEGTSCSYPSEDSSEDEEDEEEEQEVDV
                     EGHKPLEGEEEEDGRDPEDEEEEEEETRVLLGDSLVGGGRFLQGRGLSEKGSGRDRTT
                     PAVGAFPLALNSSRLLQEDGKLGDPGGSDLPAPPPPSLAPQKASGGGGSRPGSPVHHP
                     SLEEEPSYKDNQKPKENNQVILSAKDDNFSDKNKEHSFFITDSDSSGDFWRERSGEHT
                     QETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEFQVLKGNSSFPVFNNFQDQV
                     KRELAYREEMVQQLQIIPYAASLIRKEKLGAHLSKS"
ORIGIN      
        1 ctttccagtc tccaaggcaa acccggagcg ctaagcccgc tgttcttcag tggaggagat
       61 ggcttccagt ccactgccag ggcccaatga catcctactt gcatcgccgt cgagcgcctt
      121 ccagcccgac gcattgagcc aaccgcggcc gggccacgcc aaccttaaac ccaaccaggt
      181 gggccaggtg atcctctatg gcattcccat cgtgtccttg gtgatcgacg ggcaggagcg
      241 cctgtgcctg gcacagatct ccaacactct tctcaagaac tttagctaca acgagatcca
      301 caaccgccga gtggcgctgg gcatcacgtg cgtgcagtgc acacctgtcc aactggagat
      361 cctgcggcgg gctggggcca tgcccatctc ttcgcgacgt tgtggcatga tcaccaagcg
      421 tgaggccgag cgcctttgta agtccttcct aggtgaaaac cggccaccca aactgccgga
      481 caacttcgcc ttcgacgtgt cgcacgagtg tgcctggggc tgccgtggca gcttcatccc
      541 ggcgcgctac aacagctctc gcgccaagtg catcaagtgt agctactgca acatgtactt
      601 ctcacccaac aagttcattt tccactccca ccgcaccccg gacgccaagt acacgcagcc
      661 agacgcagcc aactttaatt cctggcgccg ccatctcaag ctcacagaca agagccctca
      721 ggacgagcta gtcttcgcct gggaggacgt caaggccatg ttcaacggtg gcagccgcaa
      781 gcgcgcgcta cctcaaccca gcgcgcatcc ggcctgtcac ccactcagtt cagtcaaggc
      841 tgctgcggtg gcggccgcag ccgcagtggc cgggggcggg ggccttctgg gcccgcacct
      901 gctgggggct ccacccccgc cgccgccacc accacccttg gctgagctgg cgggcgcacc
      961 tcacgcccat cacaagcggc cgcgcttcga cgacgatgac gattcccttc aggaggcggc
     1021 cgtggtggct gcagccagcc tttcggcagc ggcagccagc ctctcggtgg ccgcagccac
     1081 tggcggcgcc ggaccgggcg caggtggccc cggcggtggc tgcgtggccg gcgtgggcgt
     1141 gggtgccact gcaggggctg gtgcagcagc tggcaccaag ggtccacgca gctacccagt
     1201 catcccagtg cccagcaagg ggtcgttcgg gggcgtgcta cagaagttcc cgggctgcgg
     1261 gggcctcttc ccgcatcctt acaccttccc ggccgcggcc gcggccttcg gcttgtgcca
     1321 caagaaggag gacgcaggga cagcggccga ggccctaggg ggagcgggcg cggggagcgc
     1381 aggtgcggcg cccaaggctg ggctgtcagg tctcttctgg cccgcgggcc gcaaggacgc
     1441 cttctatcct cccttctgca tgttctggcc accgcggacc cccggagggt tgcccgtgcc
     1501 cacctaccta cagcccccgc cgcagccgcc gtctgcgctc ggctgcgcgc tgggtgacag
     1561 cccggccctg ctacgccagg cctttctgga cctggccgag ccaggcggtg caggtggcag
     1621 cgccgaggca gcgccccctc cgggccagcc tccccccgtg gtggccaatg gccctggctc
     1681 gggtcctcca gctactgggg gcaccggatc acgcgacacg ctctttgagt cgcccccggg
     1741 cggcagcggc ggggactgca gcgccgggtc cacgccaccc gcagagcccg gagtgacgtc
     1801 cgggaacggg gctacatcct ccggagccgg ctctgtgggc acccgggtgc cggcccccca
     1861 tcacccgcac ctcctggaag ggcgcaaggc gggcggcggc agctaccacc attccagcgc
     1921 cttccggccg gtgggcggca aggacgactc agagagcctg gccaagctgc acggggcgtc
     1981 ggcgggcgcg ccccactcgg ccccagcgca ccaccatcac caccaccatc acccgcacca
     2041 ccaccaccac caccctccgc agccgccgtc gcctctgctg ctgctgcagc cacagcccga
     2101 cgagccgggg tcggagcgcc accacccagc cccgccaccc ccaccgccgc cgcccccatt
     2161 ggccccccag ccgcaccacc gaggccttct gtcccccgag ggcaccagct gcagctaccc
     2221 cagcgaggac agctctgaag acgaggagga cgaggaggaa gagcaggagg tggatgtgga
     2281 gggccacaag ccgctcgaag gcgaagaaga ggaggacggt cgagatccag aggatgagga
     2341 ggaagaagag gaggagaccc gggtccttct cggagactcc ctggttggcg gtggccggtt
     2401 cctccagggc cgagggctgt cggagaaggg gagcggtcgg gaccgcacga cgcccgccgt
     2461 gggtgctttc cctctagcgc tgaactcctc caggctgcta caggaggatg ggaagctggg
     2521 ggaccccgga ggctcggacc tgccggcgcc cccgccccca tctctggccc cacagaaagc
     2581 aagcggcggt ggaggcagca ggccaggcag ccccgtccac catccatcac tggaggagga
     2641 gccctcgtac aaagataatc agaaacctaa ggaaaacaac caagttattc tatcagcaaa
     2701 ggatgacaac ttctcagata agaacaagga acacagcttt ttcatcacag actctgattc
     2761 ttctggagac ttttggagag aaagatcagg tgaacacaca caagaaacca actcacctca
     2821 ttcgctcaaa aaggatgtag aaaacatggg aaaagaggaa cttcagaagg ttttatttga
     2881 gcaaatagat ctacggaggc gactggagca agaattccaa gtgttaaaag gaaactcgtc
     2941 cttcccggtt ttcaataact tccaggacca ggtgaaaagg gaactggctt accgagaaga
     3001 gatggtgcag cagttacaaa tcatccccta tgcagcgagc ttgatcagga aagagaagct
     3061 tggcgcccat ctcagcaaaa gctaaaaggc gacataccca cttacctacg ttctgtaaga
     3121 tacgacccac cactgagcac ttcggaccta gcagaaagag gagctgcaaa ctgacggggc
     3181 ctgggcctca gaaccaggtt cgagagaagc caaggacaag tgacctcgag gcagcatggg
     3241 cgaccatgta aaatagactg tggcggtcat tcattaggag gggggagggg ggggagccaa
     3301 ccagagcggt cgatgcttgt cacatctttt ggtggaacca aagttggaat atttgtgttt
     3361 ttaaagcata gctgatccca gagggtagga ggtgctaagt gaggaacaaa tgttcgtgtg
     3421 gtctccgcag cgccatacga ctgtcctttg cttttccaga agtgattcgt agtggaaaga
     3481 agacagaaga gcaatcctgg gaatggggac ttacggttag acaaacctgc tttttcatag
     3541 caagctggac agacacacac ggccccttcc tctctggtac tttgcctgct gtatgaagac
     3601 tgtattcctc tggaaatatt ttacagttta atattgagtg taattaagaa tataatcatg
     3661 ttatcaaaaa tggtatttaa ctctgttgta gtttctttaa cattcatgtg gataaaaagt
     3721 ctataataaa aaaaagctat gaagtaatgg atgcgctcat gtagttaagt gcgtatttgc
     3781 tcgggagcaa ctcagaaacg aatgcttttt agagttattt tggcataaag tatttgaata
     3841 aattattttt tgaaagcagc tttccttcac agatgattat taaaggttag gctagcctgt
     3901 gattcccctc aacatctggg ggccaatcca tgaccttaga atctctccag ttcctggcag
     3961 acttggtgac ggggtgagcg tcatggcttc ctcgtcactg tgatgttaaa tccaaaccca
     4021 tataatagtt ttatgctgaa aatgcctttc agatgcaata aacagaagag gcgaaatgtg
     4081 accctttgca gaaatacttt ctaaggtagt tctgggtcca ccatggatga cttcccagct
     4141 cgaagc
//
