LOCUS       NM_001376952            3631 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SKI family transcriptional corepressor 1 (Skor1),
            transcript variant 1, mRNA.
ACCESSION   NM_001376952 XM_006226425 XM_006243246
VERSION     NM_001376952.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Arndt,S., Poser,I., Moser,M. and Bosserhoff,A.K.
  TITLE     Fussel-15, a novel Ski/Sno homolog protein, antagonizes BMP
            signaling
  JOURNAL   Mol Cell Neurosci 34 (4), 603-611 (2007)
   PUBMED   17292623
REFERENCE   2  (bases 1 to 3631)
  AUTHORS   Mizuhara,E., Nakatani,T., Minaki,Y., Sakamoto,Y. and Ono,Y.
  TITLE     Corl1, a novel neuronal lineage-specific transcriptional
            corepressor for the homeodomain transcription factor Lbx1
  JOURNAL   J Biol Chem 280 (5), 3645-3655 (2005)
   PUBMED   15528197
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Dec 5, 2019 this sequence version replaced
            XM_006243246.2, XM_006226425.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JAXUCZ010000008.1  72503050-72503201   c
            153-2349            JAXUCZ010000008.1  72500627-72502823   c
            2350-2446           JAXUCZ010000008.1  72499612-72499708   c
            2447-2557           JAXUCZ010000008.1  72498609-72498719   c
            2558-2629           JAXUCZ010000008.1  72498123-72498194   c
            2630-2704           JAXUCZ010000008.1  72496763-72496837   c
            2705-2779           JAXUCZ010000008.1  72496476-72496550   c
            2780-2845           JAXUCZ010000008.1  72495908-72495973   c
            2846-3631           JAXUCZ010000008.1  72494554-72495339   c
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3631
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /note="SKI family transcriptional corepressor 1"
                     /db_xref="GeneID:315748"
                     /db_xref="RGD:1307687"
     exon            1..152
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..2940
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ladybird homeobox corepressor 1; ladybird homeobox 1
                     homolog corepressor 1"
                     /codon_start=1
                     /product="SKI family transcriptional corepressor 1 isoform
                     1"
                     /protein_id="NP_001363881.1"
                     /db_xref="GeneID:315748"
                     /db_xref="RGD:1307687"
                     /translation="MALLCGLGQVTLRLWVSLPFQTENRIGFLAAGAFLRSGGMEALT
                     TQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQ
                     ISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAE
                     RLCKSFLGEHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFS
                     PNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTR
                     KRTFSLQGGGGGGANSGSGGAGKGGAGGGGGPGCGSEMAPGPPPHKSLRCGEDEASGP
                     PGPPPPHPQRALGLAAAANGPAGPGGPGGSAGVRSYPVIPVPSKGFGLLQKLPPPLFP
                     HPYGFPTAFGLCPKKDDPVLVAGEPKGGPGTGSGGGAGTAAGAGGPGAGHLPPGAGPG
                     PGGGTMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAK
                     AVAAAVAAAAAAAAAAAGGGGPESLDGAEPAKEGSLGTEERCPSALSRGPLDEDGADE
                     ALPPSLAPLAPPPPPPARKSSYVSAFRPVVKDAESIAKLYGSAREAYGSGPARGPVPG
                     TGTGGGYVSPDFLSEGSSSYHSASPDVDTADEPEVDVESNRFPDEEGAQEDTEPSVPS
                     TGGGPDGDQPAGPPSVTSSGADGPTDSADGDSPRPRRRLGPPPAIRSAFGDLVADDVV
                     RRTERSPPNGGYELREPCGPLGGPAAAKVYVPERDEHVKSAAAAAALGPAASYLCTPE
                     THEPDKEDNHSTTADDLETRKSFSDQRSVSQPSPANTDRGEDGLTLDVTGTQLVEKDI
                     ENLAREELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTL
                     CNELDQERKARYAIQQKLKEAHDALHHFSCKMLTPRHCTGNCSFKPPLLP"
     exon            153..2349
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2446
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2447..2557
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2629
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2630..2704
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2705..2779
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2780..2845
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
     exon            2846..3631
                     /gene="Skor1"
                     /gene_synonym="Lbxcor1; RGD1307687"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggcacgca aacctgagtg ccggctggaa agcctggatt tggctatggc attgctgtgt
       61 ggccttgggc aagtcactct ccgtctctgg gtttcacttc ctttccaaac tgaaaacagg
      121 attggcttcc tggcagctgg ggctttcctg aggagcggcg gcatggaggc tctcaccact
      181 cagctggggc cgggacgcga gggcagttcc tctcccaact ccaagcaaga gttgcagccc
      241 tactcgggat ccagcgccct taaacccaac caggtgggcg agacgtcgct gtacggggtg
      301 cccatcgtgt cactggtcat tgatgggcag gagcgcctgt gcctagccca gatctccaac
      361 actctgctca aaaactacag ctacaatgag atccacaacc gccgcgtggc cctgggcatc
      421 acgtgcgtgc agtgcacacc ggtgcagctg gagatcctgc gtcgggccgg ggccatgccc
      481 atctcctctc gccgttgcgg tatgatcaca aaacgagagg ccgaacgcct gtgcaagtcc
      541 ttcctgggcg agcacaagcc acccaaactg cccgagaact tcgcctttga cgtggtgcac
      601 gagtgcgcgt ggggttctcg gggcagcttc attcctgccc gttacaacag ctctcgtgcc
      661 aagtgcatca agtgcggtta ctgcagcatg tatttctcgc ccaacaagtt catcttccac
      721 tcgcaccgca cacccgacgc caagtacacc cagcccgacg ccgccaactt taactcgtgg
      781 cgtcggcacc tcaaactcag tgacaagtcg gccaccgacg aactgagcca cgcttgggag
      841 gacgtcaagg ctatgtttaa tggcggtacg cgcaagcgga ccttctccct gcaagggggc
      901 ggcggaggcg gtgctaatag cgggtctggt ggtgcaggga agggcggcgc tggtggcggt
      961 ggcggtccgg ggtgcggctc agagatggcc ccaggcccac cgcctcacaa aagtctgcgc
     1021 tgcggtgaag acgaagcgtc tgggcctccc gggccacctc caccgcatcc gcagcgcgca
     1081 ctcggcctag cggcggcagc taatggccct gcaggacctg gaggacctgg gggcagcgcg
     1141 ggggttcgca gctaccccgt gattccagtg cccagcaaag gttttggcct cttgcaaaag
     1201 ctgcccccgc ctcttttccc gcatccttac ggtttcccca cagccttcgg cctatgtccc
     1261 aaaaaggacg acccagtgtt ggtcgctgga gagcccaagg ggggccctgg caccgggagc
     1321 ggtgggggcg ctggcaccgc cgcgggtgcc ggtggcccgg gagctggcca cttgcccccg
     1381 ggagcaggac ccggccctgg tggcggaaca atgttctggg gacatcaacc ttccggcgca
     1441 gccaaggacg cagcggcggt agctgcggca gctgccgccg ccactgtgta cccgacgttt
     1501 cccatgttct ggccagctgc cgggagcctc ccggtgcctc cttaccccgc cgcgcagagc
     1561 caagctaagg ccgtagcggc tgcagtggct gcggctgctg ctgctgcggc ggcggcggct
     1621 ggcgggggcg gtcctgagtc tttggacggt gcggagccag ctaaggaggg cagcctcggt
     1681 acagaggagc gctgcccgag cgctctatcc cgcggccccc tggacgagga cggtgcggac
     1741 gaggcgctgc caccgtccct ggctcccctg gcccctccgc caccgccacc tgcccgcaaa
     1801 agctcctacg tgtcagcctt ccgacccgta gtgaaggacg cggagagcat cgctaagctc
     1861 tacggcagtg cgcgcgaggc ctacggctcc gggcctgctc gtgggccagt gcccggcacc
     1921 gggaccggag ggggctacgt gagcccggac tttctgagcg agggcagctc gagctatcat
     1981 tctgcctcgc ccgacgtgga caccgcggac gaaccggagg tggacgtgga gtccaaccgc
     2041 ttccccgacg aggagggagc ccaggaggac acagagccca gcgtacccag cacgggaggt
     2101 ggcccagacg gtgaccagcc tgctgggccc ccatctgtca catcctcagg cgcagacggc
     2161 cccacagact ctgcggatgg cgatagccct cgccctcgcc gccgccttgg gccaccgcct
     2221 gcgatcagat ccgcattcgg ggacctggtg gctgatgatg tagtgcggag aactgagcgg
     2281 agcccaccga acggcggcta tgagctacga gagccttgcg ggcccctggg aggccccgcg
     2341 gcggccaagg tgtatgtgcc tgagagggac gaacacgtga agagtgcggc ggcggcggcg
     2401 gcactggggc ccgcagcctc gtatctctgc accccagaga cccacgagcc agataaggaa
     2461 gacaatcact cgacgacagc cgacgacttg gaaaccagaa aatccttttc agaccaaagg
     2521 agtgtctccc agccaagccc tgcaaataca gatcgaggtg aagatgggct tactttggat
     2581 gtcacaggaa ctcaattggt ggagaaagat atcgaaaacc tggccagaga agaactgcag
     2641 aaattgcttc tggagcaaat ggagcttcga aagaagctgg agcgggaatt ccagagtctc
     2701 aaagataatt ttcaggatca aatgaagagg gaattggctt atcgggaaga aatggtgcaa
     2761 cagctgcaaa ttgtcagaga taccttgtgt aacgaactgg accaggagag gaaggcccgc
     2821 tatgccatcc agcagaaatt aaaagaagct cacgacgccc tgcaccactt ctcctgcaag
     2881 atgctgacac cccggcactg cacaggcaac tgctccttca agcctccgct gttgccctag
     2941 cgctggcttg gccgcgccca cgcgccctca agccgtgctg ctcctttctg taaatacccg
     3001 ctgcagtggc ggcccagagc gaggaacaag ccattaggac ccaaccgttg taaatacagc
     3061 ctcgggcacg caggtcccca gccgggctct gctgggtttc cccactgtaa atactgcctc
     3121 gcccctcctt tgaactccag ggcatcagac ctcaagggtt aaactggacc cacccggggg
     3181 aaaaaggggg ggaggtggga gacctcttcc acgacccctc ccactccacc ctgagtaggg
     3241 cctgggaccc ggaatgtgaa tataatgtag cttcttcgct ggctccggcc gtgcgctccc
     3301 agtcctgtcc acttctgaaa ctcttgttcc taacgacaac gtggctatgt gcaatggata
     3361 taaacggact gtgagtctct tggttcagta ttaggttcgc tttatttata ctgtaagtta
     3421 ttttacttac cctggacccc tatccagtcc tcgttttaca ttcattcttg tttggatttg
     3481 ctttgtgatt ttgttgttgt tattgttgtt gttgttgttg tgtaacgtaa cagcacttta
     3541 aaaggacgac aactgactca cgagatggtg accatcttga gcctatttgg ggagacctgt
     3601 atccgtgact tttgttttta ataaaaagaa a
//
