LOCUS       XM_006238600            1119 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selection and upkeep of
            intraepithelial T cells 2 (Skint2), mRNA.
ACCESSION   XM_006238600
VERSION     XM_006238600.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238600.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238600.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1119
                     /gene="Skint2"
                     /note="selection and upkeep of intraepithelial T cells 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 Proteins"
                     /db_xref="GeneID:313485"
                     /db_xref="RGD:1566327"
     CDS             4..1119
                     /gene="Skint2"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 2-like"
                     /protein_id="XP_006238662.3"
                     /db_xref="GeneID:313485"
                     /db_xref="RGD:1566327"
                     /translation="MGATGVLATHCVILCFLHKEALSSEQFTVTGLQRPVLASLGGNV
                     DLSCQLSPPQQAQHMEIRWFRNRYTEPVHLYRNGKDLHGETISKYVERTELLKDAIGE
                     GKVTLRIFKLTADDDGSYHCVFKVGEFYEEHITEVKVTATSSDIQILMHPPNIKGVML
                     ECHSGGWFPQPHMEWRDSKGKVIPAASKSHSQDENKLFNMTMTLLIEASSYRNVTCYL
                     QNRLTHQEENISIVLSGKLFSWKTVWIMILTTTGCMLIVFCMIYCVQRHVINGSFSEE
                     ICYWLKCAMVLIFSVLAVTGVMLFLHRDQRAQVSDQHFELNTLWLEDISVILCVLIVF
                     IIKLISFIYFRLEGKYDGDGSNLENLFHGTNAQMSRM"
ORIGIN      
        1 ataatgggag ctacaggagt acttgctaca cactgtgtta tcttgtgctt ccttcataag
       61 gaagcactga gttcagaaca attcacagtg actggcttac agaggccagt cctggcctca
      121 ttgggtggaa atgttgacct gagttgtcag ttgtctccac cacaacaagc acaacatatg
      181 gagattcgtt ggtttcggaa tcgctataca gagcctgtgc acctgtacag gaatggtaaa
      241 gacctgcatg gggaaactat ctccaagtat gtggagcgga ctgaacttct gaaagatgcc
      301 attggagagg ggaaagtgac cctcaggatc tttaaactga cagctgatga tgatgggtca
      361 taccactgtg ttttcaaagt tggggagttt tatgaagagc atatcacaga ggtcaaggtc
      421 acagccacaa gttcagatat ccagattctc atgcatcccc ctaatatcaa aggtgtaatg
      481 ttggagtgtc attcaggagg ttggttccca cagcctcata tggaatggag agacagcaag
      541 ggaaaggtca ttccagctgc atcgaaatcc cattcacagg atgaaaacaa attgttcaac
      601 atgacaatga cccttcttat tgaagccagc tcttacagga atgtcacttg ctatcttcaa
      661 aaccgtctaa ctcaccaaga agaaaacata agcattgttc tatcaggtaa actcttttca
      721 tggaaaactg tttggataat gattctgact acaacaggat gcatgctgat agtcttctgc
      781 atgatttatt gtgttcagcg tcatgtcata aatggtagct tctctgagga aatatgctat
      841 tggttaaagt gtgcaatggt actcatattt tcagtgcttg cagttacagg agtcatgcta
      901 tttttgcacc gagatcaaag agcccaagtt tcagatcaac actttgaatt gaacactttg
      961 tggcttgaag atattagtgt gatcctgtgt gtgctgatag tgtttatcat caagctcatt
     1021 tcatttattt acttcagatt agaaggtaaa tatgatggcg atggtagcaa cttagaaaat
     1081 ctgtttcatg ggactaatgc acagatgtct agaatgtga
//
