LOCUS       XM_056985551            1531 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selection and upkeep of
            intraepithelial T cells 10 (Skint10), mRNA.
ACCESSION   XM_056985551
VERSION     XM_056985551.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985551.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1531
                     /gene="Skint10"
                     /note="selection and upkeep of intraepithelial T cells 10;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:689876"
                     /db_xref="RGD:1587504"
     CDS             367..1347
                     /gene="Skint10"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 10"
                     /protein_id="XP_056841531.1"
                     /db_xref="GeneID:689876"
                     /db_xref="RGD:1587504"
                     /translation="MESSASCLPGFFLVFLLLQITVLTQAMSLDIQINIRVPNTEGVL
                     VECASGSLIPPAEMTWKDSKGNIIPHSTTFDSQDRAGLYLKSSILLKNRVQGPITCSI
                     YNVTTNQEKKRSIDLPDVLFKSEYMSLMSNKFSCPLMYLSIILFLNFLRGILVFCCLK
                     GKPVYFRELMSKINEGLNSKMRACCPLIWECLLLVLYIFFLPLYLNFRSQASILDDAY
                     PLYSNWLWDICIILVVMMIFFTGLILFLLWTLNRYGQMSCLSSMNMNLSTHDSNQNSS
                     QSAEFQENYDVNCNMFLEPGEEAILSQHQENYELESFNPLQPLRLDCSRN"
ORIGIN      
        1 acaagcaacg tgggaaaaat tcttcagtcc taagatgcta tctgatgaag cctttgggtt
       61 ggtggaggct ataggtctgt ttacatgttc ttatattttt attttatttt gtctctatat
      121 aggtatgtac atgtgagtgc tggtccctgc agagataaag ctggaattac cagtggttgt
      181 gagatgtctg aagtgggtgc ttggaattga atctgcaaga attgaacttg caagagatga
      241 agttattatt ctgaaagcac agagccaagt acaaaacaag acaggactct agaagagatc
      301 acctcagaga agtggcacca gtcattgata cttttccttg caagggaaat tttctcaaaa
      361 ggtgtgatgg agtcttcagc ttcctgttta cctggattct tcttggtctt ccttctctta
      421 cagatcacag tactcaccca agctatgagc ttggatatac agattaacat ccgggttcca
      481 aatacagaag gggtactggt ggaatgtgct tcaggaagtt tgatcccacc tgctgagatg
      541 acatggaaag acagcaaggg gaatataatt ccacattcaa ccacatttga ctctcaggat
      601 agagctgggt tgtatttgaa gagcagcatt cttctgaaga acagagtaca aggtcctatt
      661 acttgctcca tttacaatgt aactactaat caggagaaaa agagaagtat tgatctacca
      721 gatgtcctgt tcaaatcgga gtatatgtca ttgatgtcaa acaaattttc atgtccttta
      781 atgtatttaa gcattatact ttttcttaat tttctcagag gaatacttgt tttttgttgt
      841 ctcaaaggaa aacctgttta tttcagagaa ctaatgagta aaatcaatga aggtttgaat
      901 agtaaaatga gagcttgctg tccacttatc tgggagtgtc tgctgttagt tttgtatatt
      961 ttcttcctcc ctctctactt gaatttcagg agccaagctt ctattttgga tgatgcatac
     1021 ccattgtata gtaactggct atgggacata tgcataatct tggttgtaat gatgatattt
     1081 ttcactgggc tcattttgtt tctgctttgg accctaaacc gttatggtca gatgtcctgc
     1141 ttatcctcta tgaatatgaa tctttccaca catgactcta accaaaatag ttctcaatct
     1201 gctgagttcc aagaaaatta tgatgtaaac tgcaacatgt tcctagaacc tggtgaagag
     1261 gcaatactta gtcagcacca agaaaattat gaactggaga gcttcaaccc tcttcagccc
     1321 ttaagattgg attgcagtcg caactgaaaa acttgaggca gtaaagaaag acaaaaacgg
     1381 atactgactt gaaccataag atttatatct atataaagaa aggttttctg attaaatttg
     1441 ttatgtctta aaagttgaga tttttaaaaa tacattttaa taaaaataga attacattgc
     1501 attccctcct ctcttttctt tctccagctc c
//
