LOCUS       NM_001135916            1202 bp    mRNA    linear   ROD 10-MAY-2024
DEFINITION  Rattus norvegicus selection and upkeep of intraepithelial T cells 1
            (Skint1), transcript variant 1, mRNA.
ACCESSION   NM_001135916 XM_001068624 XM_001072059
VERSION     NM_001135916.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU650232.1.
            
            On or before Oct 21, 2008 this sequence version replaced
            XM_001068624.1, XM_001072059.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU650232.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..1202
                     /gene="Skint1"
                     /note="selection and upkeep of intraepithelial T cells 1"
                     /db_xref="GeneID:689801"
                     /db_xref="RGD:1587579"
     exon            1..62
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            63..143
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1201
                     /gene="Skint1"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; selection and upkeep of intraepithelial T-cells
                     protein 1"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 1 isoform 1 precursor"
                     /protein_id="NP_001129388.1"
                     /db_xref="GeneID:689801"
                     /db_xref="RGD:1587579"
                     /translation="MGSTGLYFYGHCVVMFLLQMNTANSELFTVTGSDVPVLASLGGN
                     LELSCQLSPPQQAQHMEIRWFRNLYREPVHLYRDGKDMFGEIISKYVERTELLKDGIG
                     EGKVTLRIYNVTVDDDGFYHCVFKEGDFYEEHITEVKVTAINLRVQIHVHPPNTKGVI
                     VECHSGGWFPRPLMEWRDSRGEVIPAASKSHSQGGDRLFNMKISLLISDSSFQKITCC
                     LQNPLTGQEGRTSVILSDAFFSWNIIWKMILGIILFVMVLSILVSSFLLHPEHNRCRC
                     TCDAPWVTGILIMISSVVIVISIMGYLHLKQRVPVSDAHFELDILWVEDLSVILCSLM
                     VSATMLISYTYFKLRDWCHKIILRGTSSATDGNRCKEPHLNIK"
     exon            144..491
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            492..773
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            774..884
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            885..992
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1115
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1202
                     /gene="Skint1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatctaactg ggactatctc tacaggaacc aaaaggagct gacccacgat ctccagtacc
       61 aagtgcaatg ggatccacag gactgtattt ttatggacac tgtgttgtta tgttcctcct
      121 tcagatgaat acagcaaact cagagctatt tacagtgact ggctcagatg tgccagtctt
      181 ggcttcattg ggtggaaact tagaactcag ttgtcagttg tctccaccac aacaagccca
      241 gcacatggag attcgctggt tccggaacct ctatagggag cccgtgcacc tatacagaga
      301 tggtaaagac atgtttggag agattatctc caagtatgtg gaacggacag aactactaaa
      361 agatgggatt ggagaaggga aagtgaccct taggatctat aatgtgactg ttgatgatga
      421 tggattttac cactgcgtgt tcaaagaagg tgatttttat gaagagcaca tcacagaggt
      481 caaggtcaca gctataaact tacgggtaca gattcatgtg cacccaccta ataccaaagg
      541 tgtgatagtg gaatgtcact ctggaggttg gttcccacgg cctctcatgg aatggagaga
      601 cagcagaggg gaggtcattc cagctgcatc aaaatcccat tcacagggtg gagacagact
      661 gttcaatatg aagatatccc ttctcattag tgacagctcc ttccagaaaa tcacttgctg
      721 ccttcagaac cctctgacag gccaagaggg aaggacaagt gttatcttat cagatgcatt
      781 tttttcatgg aatataattt ggaaaatgat tctgggtata atattatttg tgatggtgct
      841 ctccatcttg gtttctagtt ttctcctaca tcctgaacat aacaggtgta ggtgtacatg
      901 cgatgctcct tgggtgacag gcatattaat aatgatatct tcggtggtga ttgtcatatc
      961 aatcatgggg tatttacatt tgaaacaaag agttcctgtt tcagatgcac attttgaatt
     1021 ggacattttg tgggtggaag atttaagtgt aatcctgtgt tcactgatgg tttctgctac
     1081 catgctcatt tcctatacat acttcaaact gagagattgg tgccacaaaa tcatcctcag
     1141 agggacttcc tcagcaactg atggaaacag atgcaaagaa ccacatctaa acattaagta
     1201 at
//
