LOCUS       NM_213559               3912 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus SKI2 subunit of superkiller complex (Skic2),
            mRNA.
ACCESSION   NM_213559 XM_215327
VERSION     NM_213559.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Zhu,B., Mandal,S.S., Pham,A.D., Zheng,Y., Erdjument-Bromage,H.,
            Batra,S.K., Tempst,P. and Reinberg,D.
  TITLE     The human PAF complex coordinates transcription with events
            downstream of RNA synthesis
  JOURNAL   Genes Dev 19 (14), 1668-1673 (2005)
   PUBMED   16024656
REFERENCE   2  (bases 1 to 3912)
  AUTHORS   Qu,X., Yang,Z., Zhang,S., Shen,L., Dangel,A.W., Hughes,J.H.,
            Redman,K.L., Wu,L.C. and Yu,C.Y.
  TITLE     The human DEVH-box protein Ski2w from the HLA is localized in
            nucleoli and ribosomes
  JOURNAL   Nucleic Acids Res 26 (17), 4068-4077 (1998)
   PUBMED   9705521
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883045.1.
            
            On Sep 28, 2009 this sequence version replaced NM_213559.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00155332,
                              SAMN12840131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                BX883045.1         38049-38100         c
            53-156              BX883045.1         37863-37966         c
            157-266             BX883045.1         36560-36669         c
            267-384             BX883045.1         36342-36459         c
            385-499             BX883045.1         36139-36253         c
            500-574             BX883045.1         35985-36059         c
            575-628             BX883045.1         35680-35733         c
            629-801             BX883045.1         35419-35591         c
            802-930             BX883045.1         35157-35285         c
            931-1076            BX883045.1         34793-34938         c
            1077-1223           BX883045.1         34296-34442         c
            1224-1308           BX883045.1         34119-34203         c
            1309-1415           BX883045.1         33914-34020         c
            1416-1562           BX883045.1         33415-33561         c
            1563-1659           BX883045.1         33246-33342         c
            1660-1872           BX883045.1         32855-33067         c
            1873-1983           BX883045.1         32630-32740         c
            1984-2214           BX883045.1         30888-31118         c
            2215-2352           BX883045.1         30178-30315         c
            2353-2490           BX883045.1         29902-30039         c
            2491-2595           BX883045.1         29675-29779         c
            2596-2746           BX883045.1         29259-29409         c
            2747-2873           BX883045.1         29054-29180         c
            2874-3084           BX883045.1         28687-28897         c
            3085-3195           BX883045.1         28433-28543         c
            3196-3414           BX883045.1         28141-28359         c
            3415-3555           BX883045.1         27875-28015         c
            3556-3912           BX883045.1         27439-27795         c
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..3912
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /note="SKI2 subunit of superkiller complex"
                     /db_xref="GeneID:294260"
                     /db_xref="RGD:1303059"
     exon            1..52
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..3756
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /EC_number="3.6.4.13"
                     /note="helicase SKI2W; SKI2 homolog, superkiller
                     viralicidic activity 2-like; Ski2 like RNA helicase"
                     /codon_start=1
                     /product="superkiller complex protein 2"
                     /protein_id="NP_998724.1"
                     /db_xref="GeneID:294260"
                     /db_xref="RGD:1303059"
                     /translation="MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLP
                     HGLPPCAPDLCQEAEQLFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAALGTPVPSDL
                     QAQRHPTTGHILGYKEVLLENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMD
                     EPSITDLSTREEAEEEIDFEKDLLTVPPGFKKGVDFAPKAPVPGLLSLSRLLEPLDLS
                     GGDEGEGEAAGGPRGDAASASPSSTPLIRASSLEDLVLKEASTVVSTLEPLKPPPQEQ
                     WAVPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTV
                     VAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIM
                     TTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSAT
                     VPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFH
                     TKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGPAQDRGVYLALLASLRTRAQLPVVVF
                     TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR
                     GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGST
                     FRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL
                     TYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQALADLTKRLGALEEPDVTGQ
                     LADLPEYYSWAEELTETRNMIQRRIMESVNGLKSLSVGRVVVVKNEEHHNALGVILQV
                     SSNSTSRVFTTLVLCDKPAVSENPRDKGPATPDVPHPDDLVGFKLFLPEGPCEHTVAK
                     LQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVTTAVQELLRLAQAYPA
                     GPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPAQYVKLQERMQIQK
                     EMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSSHELLLTE
                     LMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVAKRIGEVQVA
                     CGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRS
                     LRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ"
     exon            53..156
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            157..266
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            267..384
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            385..499
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            500..574
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            575..628
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            629..801
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            802..930
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1076
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1223
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1224..1308
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1415
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1562
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1563..1659
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1660..1872
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1873..1983
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1984..2214
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2215..2352
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2353..2490
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2491..2595
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2596..2746
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2747..2873
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2874..3084
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3085..3195
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3196..3414
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3415..3555
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3556..3912
                     /gene="Skic2"
                     /gene_synonym="Skiv2l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctcccca gcagctgccg cggctccagg atgatggaga ccgagcgact cgtgctgcct
       61 cccccagacc ccctgaacct gccccttcga gctctggaag tggggtgcac tggccgttgg
      121 gagctgctaa acgtgccagg gcctccagag agtactcttc cccatggcct ccctccctgt
      181 gccccagatc tgtgccagga agcagagcag ttgtttctgt cgtctccggc ctggcttcct
      241 ctacacggtg tggagcactc agctcgaaaa tggcagagga agacagatcc ctggtcgctt
      301 ctggctgctc tggggactcc agtcccatcc gaccttcagg cccagagaca cccaaccaca
      361 ggccatatac tgggctataa ggaggtcctg ctggagaaca cgaacctgtc ggccaccacc
      421 tccttgtccc ttcgccggcc tccagggcca gcctcccagt cgctatgggg caatccgaca
      481 cagtaccctt tctggccggg tgggatggac gagcccagca taactgatct gagtactcgg
      541 gaggaagccg aggaggagat agactttgag aaagatcttc tcaccgttcc acccggcttc
      601 aagaaagggg tggattttgc ccccaaagct cctgtgccag gtttgctcag cctcagccgt
      661 ctgctggagc ctctggatct gagtggaggt gatgagggtg agggagaggc agcaggaggt
      721 cctagagggg atgcggcctc agcctctccc tccagcactc ccctgatccg ggcaagcagc
      781 ttggaggacc tagtgttgaa ggaagcttcc acagtcgtat ccaccctgga gcccctcaaa
      841 cctccacctc aggaacagtg ggctgtgcct gtggacgtca cctcccccgt gggtgatttt
      901 taccgtctca tccctcagcc ggccttccag tgggcgttcg agccagatgt gtttcagaag
      961 caggccatcc tgcacttgga gcagcacgac tctgtctttg ttgcagctca cacatccgct
     1021 gggaagacgg tggtggccga gtatgccatt gccctggccc agaaacacat gacccgtacc
     1081 atctacactt ctcctatcaa agccctgagc aaccagaagt ttcgggactt ccgaaacaca
     1141 ttcggggatg tgggactgct cacgggggat gtgcagctgc acccagaggc ctcctgcctc
     1201 atcatgacca cggagatcct tcgctccatg ctgtacagtg gctcagacgt catccgagac
     1261 ctggagtggg tcatttttga tgaagtccac tatatcaatg atgctgagcg tggggtcgtg
     1321 tgggaggagg tgctcattat gctccctgag cacgtctcca tcatcctgct gagtgccacc
     1381 gtccccaacg ccctggagtt tgctgactgg atcgggaggc tgaagcggcg gcagatctat
     1441 gtgatcagca cggtggcccg tcccgtcccc ttggagcact atctcttcac aggaaacagc
     1501 cccaagacac agggcgaact cttccttctg ctggactccc gaggggcctt ccacaccaag
     1561 gggtactacg ctgccgtgga ggccaagaaa gagaggatga gcaaacacgc ccagaccttc
     1621 ggggccaagc agcccacaca ccagggtggg cctgcgcagg accgtggggt gtacctggcc
     1681 ttgctggctt ccctccggac ccgggctcag ttgcctgtgg tagtgttcac cttctcccga
     1741 ggccgctgtg atgaacaggc ttcaggtctc acctccctag acctcacaac aagctcagag
     1801 aagagtgaga tccacctctt cctgcagcgc tgtcttgccc ggctccgagg ctctgaccga
     1861 cagctccccc aggtcctgca catgtcggag ctcctccgcc gaggcctggg tgtgcaccac
     1921 agcggcatcc tgcccatcct taaggagatt gtggagatgc ttttcagccg gggcctagtc
     1981 aaggtcctgt ttgccaccga gacttttgcc atgggggtaa acatgccagc caggacagtg
     2041 gtgtttgact ccatgcgcaa acatgatggc tccaccttcc gggacctgct gcctggagag
     2101 tacgtgcaga tggcaggccg ggcgggccgg aggggcctgg accccacggg caccgtcatc
     2161 cttctctgta agggccgagt gcctgagatg gcagatctac accgcatgat gatggggaaa
     2221 ccatcacagc ttcagtccca gttccgcctc acatatacca tgatcctcaa cctgctgcgg
     2281 gtggacgccc tcagagtgga agacatgatg aagaggagct tctcagagtt cccctcccgc
     2341 aaggacagca aggcccatga gcaggctctg gctgacctca ccaagaggct gggggctttg
     2401 gaggagcctg atgtgactgg tcagttggct gacctgcctg agtattacag ctgggcggag
     2461 gagctgacag agacccggaa catgatccag cgacgcatca tggagtctgt gaacgggctg
     2521 aaatctctgt cagtgggaag ggtggtggtt gtgaagaatg aagagcatca caatgcgctg
     2581 ggtgtgatcc tgcaggtctc ctcaaactcc actagccgag tatttacaac cttggtcttg
     2641 tgtgataaac ctgctgtgtc tgagaaccca agggacaagg ggccagccac tccagatgtg
     2701 ccccacccag atgaccttgt aggcttcaag ttgttcctgc ctgaagggcc ctgcgagcac
     2761 actgtggcca agctccagcc aggggatgtg gctgccatct ctaccaaggt gctccgggtg
     2821 aatggggaga agatttctga ggacttcagc aagaggcagc aaccgaaatt caggaaggac
     2881 cctcccctcg cggccgtgac cactgctgtt caggagctgc tgcgtctggc ccaggcctat
     2941 ccagcaggac ccccaaccct cgaccctatc aacgacctgc aactgaagga tgtggcagtg
     3001 gtagaaggtg ggctccgggc ccggaagctg gaggagctga tccgaggcgc tcagtgtgta
     3061 cacagccccc ggtttcctgc ccagtatgtg aagctacagg agcgaatgca gattcagaag
     3121 gaaatggaga ggctgcgctt cctcctgtct gaccagtcgc tgttgctgct ccccgagtac
     3181 caccagcgtg tagaggtgct tcggaccctg ggctatgtgg atgaggctgg cacagtgaag
     3241 ctggcgggcc gggtggcctg tgccatgagc agccatgagc tgctcctcac tgaactcatg
     3301 tttgacaatg cactgagtgc tctgcgacca gaggaaatag cagctctgct ctctggtctg
     3361 gtgtgccaga gccccggaga ccctggggat cagctgccaa gcaccctcaa acagggggta
     3421 gaacgcgtca aagctgtggc caagcggatt ggtgaggttc aggtggcctg cggcctgaac
     3481 cagacggtgg aggaatttgt gggggagctg aattttgggc tggtggaagt tgtttatgag
     3541 tgggctcggg gtatgccctt ctccgagttg gcagggctct cggggacccc cgaaggcttg
     3601 gttgtccgct gtatccagcg cctggctgag atgtgccgct cacttcgagg ggcggcccgt
     3661 ttggtaggag agcctgtgtt aggggccaag atggagacgg cagccacctt gctccggagg
     3721 gacatcgtct tcgcagccag cctctatacc cagtaaagga tgtgtggata aaagcataac
     3781 agccggcaga cctgagacgg aggccagcct gctctacaga gcttagctcc gggacagcca
     3841 gggctacatg aagaaactat gttttgaaaa acttaaaact ataaaaataa aaaacaaaaa
     3901 ctacagagca aa
//
