LOCUS       XM_017593893            5584 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Ski proto-oncogene (Ski), transcript
            variant X1, mRNA.
ACCESSION   XM_017593893
VERSION     XM_017593893.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001100715.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017593893.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5584
                     /gene="Ski"
                     /note="Ski proto-oncogene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 70 ESTs, 3 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 235 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313757"
                     /db_xref="RGD:1565591"
     CDS             263..2446
                     /gene="Ski"
                     /codon_start=1
                     /product="ski oncogene isoform X1"
                     /protein_id="XP_017449382.2"
                     /db_xref="GeneID:313757"
                     /db_xref="RGD:1565591"
                     /translation="MEAAAAGRGGFQPHPGLQKTLEQFHLSSMSSLGGPAAFSARWAQ
                     EAYKKESAKEAGAATVPAPVPTAAEPPPVLHLPAIQPPPPVLPGPFFMPSDRSTERCE
                     TVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINSVCDELHIYCSRCTADQLEI
                     LKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSV
                     RVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGF
                     DSANWRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYANKYKRRVPRVSEPPASIRPK
                     TDDTSSQSPASSEKDKQSTWLRTLAGSSNKSLGCAHPRQRLSAFRPWSPAVSASEKET
                     SPHLPALIRDSFYSYKSFETAVAPNVALAPPTQQKVVNSPPCTTVVSRAPEPLTTCIQ
                     PRKRKLTMDAPGAPDMLTPVAAAEEDKDSEAEVEVESREEFTSSLSSLSSPSFTSSSS
                     AKDLSSPGMHAPPVAAPDAAAHADAPSGLEAELEHLRQALEGGLDTKEAKEKFLHEVV
                     KMRVKQEEKLTAALQAKRSLHQELEFLRVAKKEKLREATEAKRSLRKEIERLRAENEK
                     KMKEANESRVRLKRELEQARQVRVCDKGCEAGRLRAKYSAQIEDLQAKLQHAEADREQ
                     LRADLLREREAREHLEKVVKELQEQLWPRPRPENSGGESNAELDP"
ORIGIN      
        1 cgggcgcggc gcggggcgcg tggatgtggc gccgggcccg ggcggcggcg ggctccagcg
       61 gcgggacccc ttcgccccgc ccgccttcgc cttcgcgccc ccgggagagg ccgaggccgg
      121 ggccgtgatc ggccgtgagc cggcgacggg gggcggtcgt ggccgcggtc gcgggcggcg
      181 gcggggtgcg cggggcggcg gcggaggccg tgggggcccg ggcgcacggg agcgggagcg
      241 gccgggggag cccgatcgca ccatggaagc tgcagcggcc ggccggggcg gcttccagcc
      301 gcacccgggg ctgcagaaga cgctggagca gttccacctg agctccatga gctcgctggg
      361 cggcccggcc gctttctcgg cgcgctgggc gcaggaggcc tacaagaagg agagcgccaa
      421 ggaggcgggt gcggccacag tgccggcgcc ggtgcccact gccgcggagc cgccgcccgt
      481 gctgcacctg cctgccatcc agccgccgcc gcccgtgctt cccgggccct tcttcatgcc
      541 gtcggaccgc tccaccgagc gctgtgagac cgtgctggaa ggggaaacca tctcttgttt
      601 cgtggtggga ggcgagaagc gtctgtgcct gccgcagatc ctcaactcgg tgctgcgcga
      661 cttctcactg cagcagatca actcggtgtg cgatgagctg cacatctact gctcgcgctg
      721 caccgccgac cagctggaga tcctcaaagt catgggcatc ctgcccttct ccgcgccctc
      781 ctgcggtctc atcaccaaga cggacgcgga gcgcctgtgc aacgcgctgc tctacggcgg
      841 cgcctacccg ccgccttgca agaaggagtt ggcggccagc ctggcgctgg gcctggagct
      901 cagcgaacgc agcgtccgcg tgtaccacga gtgcttcggc aagtgcaaag ggctgctggt
      961 gcccgagctg tacagcagtc ctagcgccgc ctgcatccag tgcctcgact gccgcctcat
     1021 gtacccgccg cacaagttcg ttgtacactc gcacaaggcc ctggagaacc ggacctgcca
     1081 ctggggcttc gactcagcca actggcgggc ctacatcctg ctgagccagg actacacggg
     1141 caaggaggag caggcccgcc ttggccgctg cctggacgac gtgaaggaga agttcgacta
     1201 tgccaacaag tacaagcgga gggtgccccg ggtctcagag cccccagctt ccataagacc
     1261 caaaacagac gacacttcct cacagtcccc tgcgtcttct gagaaggaca agcagtccac
     1321 ttggctgcgg accttggctg gttcctccaa taagagcctc ggctgtgctc accctcgcca
     1381 gcgcctttct gctttccggc cctggtcccc tgcagtgtcc gcaagtgaga aggagacgtc
     1441 cccacaccta ccagccctga ttcgagacag cttctactcc tacaagagct ttgagacagc
     1501 tgtggccccc aatgtggccc tagcaccacc aacccagcaa aaggttgtga acagtccacc
     1561 atgcaccacc gtggtctccc gggcaccaga accccttact acgtgtatcc agccacgaaa
     1621 gcgaaagctg accatggacg caccaggagc cccagacatg ctcacacccg tggctgctgc
     1681 agaggaggac aaggattctg aggccgaggt tgaagttgaa agcagagagg aattcacctc
     1741 ctccttgtcc tcgctgtcct ccccatcctt tacctcgtcc agctctgcca aggatctaag
     1801 ctcccccggc atgcatgctc cccctgtggc tgctcctgat gccgcagccc atgctgatgc
     1861 cccaagtggg ctggaggcag agttggagca ccttcggcaa gccctggagg gtggcctgga
     1921 taccaaggaa gccaaagaaa agttccttca tgaggtggtc aaaatgcgag ttaagcaaga
     1981 ggagaagctg acagcagccc ttcaggctaa gcgcagcctg caccaggagc tagaattctt
     2041 gcgtgtggcc aagaaggaga aactgcggga agccacagag gccaagcgca gtttgaggaa
     2101 agagattgag cggctccgag ctgaaaatga gaagaagatg aaggaggcca acgagtcccg
     2161 ggtgcgcctg aagcgagaac tggagcaggc gcggcaggtc cgggtgtgtg acaagggctg
     2221 cgaggccggg cgccttcgtg ccaagtactc agcccagatt gaggacctgc aagcaaagct
     2281 gcagcatgca gaggctgacc gtgagcagct tcgagctgac ctgctgcggg aacgggaggc
     2341 ccgtgagcac ctggagaagg tggtgaagga gcttcaggag cagctgtggc ctcggccacg
     2401 gcctgagaat tctggaggtg agagcaacgc tgagctggat ccctagcctg ggcagtgatt
     2461 gccactgcca catggacctc tatgcgtgcg cagagagcgg cgggtacgtg gctttgcagg
     2521 cccagcccat gcctctgcag ccacacagca caacgtctct actgtgccta ttaccaagcg
     2581 agtgtttgta accacatact tttggaatcc actgcaaaat tttctactgg ccaagttcaa
     2641 gtgagcaagc catgtccccc agctgcagcc agagttgaga ctggctctgt ggcttgtagc
     2701 tggtcctctg cttgctagaa cattctaaca tttacacttt tgttataagc tatttaaaac
     2761 cagtaaggag acttgatatt cagaaaatca acatgttttt tatgactaac tgtaaaaggc
     2821 ccctacacgt gacgccatct ggacacccac actggctggg tggcacccac ccaccgccgt
     2881 cctgggaagc catcaccgct catctgtgcc cgcggctaca gaggacagca agggttttct
     2941 tcagagtcta ttttttcagc aacaaggacc ccagtcttcc tgctgctgcc aggaagagca
     3001 gggagagcgc cgcgtgcgag atgagcccca acactgcccg ccttaccgcc gctgccccgc
     3061 ccatcaccat caccactaac cttgccctgc gggcaccggg aggcctgagc cggtttgccc
     3121 aggcccctgg gtgcccctgc ccacctacac cttgaggggc tgtcctgtgt taggcagtgg
     3181 ccatggtcca gtgtcctgtt gtgttgttct cacacacgcc acctagccac ccatgcgctg
     3241 cttgaccaca gcaacccctc ttcagtgcgg cagacatcac tcctcgcatc gtggactgag
     3301 gctgcagcat tggagcaaac agcattatat cactcttcct ttctcttttt tccttttttt
     3361 tttttttttt ttgttgttgt tgtttgttgt tcatttaaac atgtatttag aactgcactt
     3421 tgtcagaacc ttcccttccc tccttactcc cccgttaact gcggttttta cggatctcta
     3481 gagcagttca aaccctaagt gctcgagcgc tcacacatcc cctctggtgc ttggttgaac
     3541 aagggaatca cgagacaatg aaaatgcaga gactggactt gggggtcgtt ctgtgccttc
     3601 cagcatcttg tacagcaaac cctgacttgt ctttttaccc ccaaaatatc gtcttcagta
     3661 gcgactgaat ctgccactgt caaaatacgt tacttgcatt tattccaaat aatctcgttt
     3721 actcttaact gtttatgcaa attgtataag gtttcttatg cccaagcttg aaaaatgatt
     3781 tcccagtaga caagaggccc ccacccatcc tccaattgtg tttatttacc tgagaagatc
     3841 atacaaaagc cctcccctcc agtcctagca gggcagctgt gagccgaggg gagggggagg
     3901 cttgtgcagg tacaaacgac ctcaaggact gcggcctgca actggagact gctaagccct
     3961 gatgtctggt gccgaggtcg gtcgtctgca gggttttgcc cttggtttac tgaggggggc
     4021 tgggctgctg ctggtccccc cttctgacgt gcaatgcaaa agggacatca tgtatacgca
     4081 gcgtttattt ggagtttttc ctttggcttt ttttcctctc tttcagttat gaaacttgta
     4141 tgcatggatt tcacatctcc atagctagac ccgccatggg cattatgacc gtgtctccta
     4201 aagggtcggt tttgttacgc aacacgaaga atgctgtctc agccttgttt ttctagagtt
     4261 gtgtttttca gtcatttctt caaggaaaac taaatgattt agttggagca aagctttaag
     4321 tgtgttggtg tgcttctgtg tggctgccct gttgcctagg agatcccagt gatttggtcc
     4381 cctttgagcc tttggctcca ggggcgctca ctcctctcag cagagcctct ccttgccaca
     4441 gccctggtca ccctcagttc cctggtctcc atggtccagc actggctcca atatgggaag
     4501 ggagtgctgt ctatgtgtgc cccaggggct cttccccact taccagaatg acttagatct
     4561 gggaagggcg tgtcatctca tccattgttc ctcctggatc cttcctcccc ctgcctctgg
     4621 ttggatcaca gtttggctcc cgtggactag taacttgtcc gggacctcta ggacatagcg
     4681 tcgaggtcat ccagccactt ctgcctgatg cctgggcccc agtcctgggt gaagttggca
     4741 aagcactggg tatctggtgc agctgccgtg gatggtggcc ctgctccctg cagggtctga
     4801 ggtagacttg agggcagccc ggcactgcat gcctgtctcc ttctgaggaa ggctgcagat
     4861 ttcagagaaa gggaagagag gtttccacca tgttggctgt tgaccctccc tgtgtgttaa
     4921 acccttgacc ggttcactcg tttctatcct agaagatttt taacaaaggg aaaaaccaac
     4981 agcaataaag tcattggtga gcagctaact ggtacacacc ctgcttttca cacacaacaa
     5041 ggcagtgtaa agacaactca catgtaaata acttttctcc atttcacacc gttgtagcat
     5101 aacgtgtata tggtgactcc ttttccagaa accttcttac ctgctggttg tcttgtttcc
     5161 tgggttgttt ttaactgaag aaaaaaaaaa atgctcattt gccagagggg acaaaagcat
     5221 cttgtggcat ttcccatgtg gtgtcctcca tggcaccccc tctcccagtt cctacgcagg
     5281 ttatcccctg tggtttctcc ccacatgcct accccagggc tgatggggag gggctcttgc
     5341 tttaagtcag aagtctcaaa tgacacgctc atcaacgaaa gaaaaaaaaa aaaccacccc
     5401 acctcaactt tcataactgc ccaaacccct gcgccctcca gtcctacgct gctgctaacg
     5461 acaatacgac ggcttactct gctactcgag aactattttt atgtaattaa tgtatgcttt
     5521 cttgtttata aatgcctgat ttaaaaaaaa aggaaacaaa gaaaaagctt gccatattta
     5581 tcta
//
