LOCUS       NM_130413               1628 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus src kinase associated phosphoprotein 2 (Skap2),
            mRNA.
ACCESSION   NM_130413
VERSION     NM_130413.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Kirchgessner,H., Dietrich,J., Scherer,J., Isomaki,P., Korinek,V.,
            Hilgert,I., Bruyns,E., Leo,A., Cope,A.P. and Schraven,B.
  TITLE     The transmembrane adaptor protein TRIM regulates T cell receptor
            (TCR) expression and TCR-mediated signaling via an association with
            the TCR zeta chain
  JOURNAL   J Exp Med 193 (11), 1269-1284 (2001)
   PUBMED   11390434
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Curtis,D.J., Jane,S.M., Hilton,D.J., Dougherty,L., Bodine,D.M. and
            Begley,C.G.
  TITLE     Adaptor protein SKAP55R is associated with myeloid differentiation
            and growth arrest
  JOURNAL   Exp Hematol 28 (11), 1250-1259 (2000)
   PUBMED   11063873
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF302132.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF302132.1, BC070949.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="W"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..1628
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /note="src kinase associated phosphoprotein 2"
                     /db_xref="GeneID:155183"
                     /db_xref="RGD:620159"
     exon            1..199
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..1209
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /note="Src kinase-associated phosphoprotein;
                     Fyn-associated protein; adaptor protein; SKAP-HOM;
                     SKAP-55HOM; SKAP55-HOM; SKAP55 homolog; src
                     family-associated phosphoprotein 2; src kinase-associated
                     phosphoprotein 55-related protein"
                     /codon_start=1
                     /product="src kinase-associated phosphoprotein 2"
                     /protein_id="NP_569097.1"
                     /db_xref="GeneID:155183"
                     /db_xref="RGD:620159"
                     /translation="MPNPGSTSSPGSIPEEIRNLLADVETFVADTLKGENLSKKAKEK
                     RDSLIKKIKDVKSVYPQEFQDKGDAEEGDEYDDPFAGPPDTISLASERYDKDDDGPSD
                     GNQFPPIAAQDLSFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ
                     KGEFAIEGYDVRMNNTLRKDAKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL
                     QDMGSDVIPEDEDEKGDLYDDVDHPVPVSSPQRSQPIDDEIYEELPEEEEDTASVKMD
                     EQGKGSRDSVQHPSGDKSTDYANFYQGLWDCTGSLSDELSFKRGDVIYILSKEYNRYG
                     WWVGEMQGAIGLVPKAYLMEMYDI"
     exon            200..305
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            306..331
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            332..439
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            440..517
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            518..601
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            602..726
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            727..790
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            791..925
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1003
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1116
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1217
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1628
                     /gene="Skap2"
                     /gene_synonym="Scap2; Scap55r"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcgtccag cgaccgctgc ctggacagcc agtgacttcc ttgttgtggg tctcggccag
       61 gtcgtgtccc gagtcgtagc cccgcggtgc ttactcggac cgcttttgca agtctaggtc
      121 caagctacta ccatgcccaa ccccggcagt acctcctctc ccggctcaat ccctgaggaa
      181 attaggaacc tgttggcaga tgttgaaaca tttgtggcag acacactgaa aggggaaaat
      241 ttatccaaga aagccaagga aaagagagac tctctcatta agaagataaa agatgtaaag
      301 tctgtctatc ctcaggaatt tcaagacaaa ggtgatgccg aggaggggga tgaatatgat
      361 gatccttttg ctgggcctcc agacacgatt tccttagcct cagaacgcta tgacaaagat
      421 gacgatggcc cctctgatgg aaaccagttt cctcccattg cagcccagga cctttctttt
      481 gtcataaagg ctggttacct ggaaaaacgc agaaaagatc acagctttct ggggtttgaa
      541 tggcagaaac ggtggtgtgc tctcagcaaa acagtgttct attattacgg gagtgataaa
      601 gacaaacaac agaaagggga atttgccata gagggctatg acgtcagaat gaacaacacc
      661 cttaggaagg atgcaaagaa agattgctgt ttcgaaatct gtgctcccga taaacgtatc
      721 tatcagttta cagcagcctc tcccaaagat gctgaggaat gggtccagca gctgaaattc
      781 atattacaag acatgggatc tgacgttatt cccgaggatg aagatgaaaa aggggactta
      841 tatgatgatg ttgatcatcc tgttccggtc agcagcccac aaaggagcca accaatagat
      901 gatgaaattt atgaggaact tccagaggag gaagaggaca ccgcttcagt gaagatggac
      961 gaacaaggga aggggagtcg ggacagtgta cagcatccct caggagataa aagcaccgat
     1021 tatgctaatt tttaccaggg cttgtgggac tgcactggat ctctttctga tgagttgtcc
     1081 tttaagcgtg gtgatgtgat ttacattctt agcaaggaat acaatagata tggctggtgg
     1141 gtaggagaaa tgcagggagc cattggcttg gtgcctaaag cctacctaat ggagatgtat
     1201 gatatttgag agtctgggag aaataaatca acatttctac tgaagaaaac aaaacttaaa
     1261 tgtagctttc cccttttgct ggcacagaag tctgtccatc tgcaagcgct ttggaacaca
     1321 gactgcctgg agccaccttc ctttgggaga ccttcctgcc tcagctgtcg tcctgtgtcg
     1381 tcattcacta aagctcctga cgtcagatta agcaagcagt gatgggttac attagagaca
     1441 agccgcagag ataaggcctg ttgctgtttc gcagataatg atgagtttta atttacccac
     1501 tggtttgtat ggggaattca ttgtgattgt atctgaatct tagtcattga agccaccact
     1561 gaaggttgct gtttctcgta gtcactgggt tatttttaga gtgccacata taatttccta
     1621 aactttgt
//
