LOCUS       XM_039113252            2485 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Six6 opposite strand transcript 1
            (Six6os1), transcript variant X1, mRNA.
ACCESSION   XM_039113252
VERSION     XM_039113252.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113252.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2485
                     /gene="Six6os1"
                     /note="Six6 opposite strand transcript 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:500673"
                     /db_xref="RGD:1559456"
     CDS             99..1829
                     /gene="Six6os1"
                     /codon_start=1
                     /product="protein SIX6OS1 isoform X1"
                     /protein_id="XP_038969180.1"
                     /db_xref="GeneID:500673"
                     /db_xref="RGD:1559456"
                     /translation="MNDSLFVSLDRLLLEFVFQYEQDISIKEDKIQRINKCLESIKEN
                     KANISKICEAINKIDEDIAFYYKHSKEIKDSCSNWKPTCDVFHKHEDYIKDQLTTYQE
                     THEKDKKMYHDYISQYEDVLKQYQLKYSETHFSCKYYEKKKEHEEIKNRVLACTEQLK
                     LNETTLMKFLVPAPFPSLTKWTLYIVNLRYKTQDILKCANDFTKRSFELEKEANDMEI
                     EINSLNKQIARLFESKKFSEALDEKKKNTEKRKEFEERIPEKDEQVWNTSSQSSQLLP
                     CDPQRLVRLTSKSSSEPRGTDKKEENSANQSKFVRSDLRQKENDPQIFNDSGMDSNSK
                     SSHVPAVKSSQGFMQFRLNQPNYNQWIEKEHIDAECGDKETVRQLRESKCSTQALYIE
                     HFGKSIEADSVEEEKAENFPQTPETPSFLRTPEALKTPESVEKMQFPKSPFFEISKNA
                     ASEGQKQKDSPGFSFLMSYTSRSPGLSLFDSSVSDSEISSDQFNEHYPAVNLNPPSSQ
                     QGIGNLFGKSEGEDAFTFSFSSDSSHTFGAGKDDFSFPFSFEQDQNTMSSSSSKDFSS
                     SQNKTQFMFF"
ORIGIN      
        1 gctcagggca ggtagcgttt gcagaacccc gcgctgggga ccccgggaag agcgagcgtg
       61 gatgtccggg ggtccgtagg gacctattag tgtccaagat gaatgacagc ctgtttgtca
      121 gtttggacag gcttttgtta gaatttgttt tccagtatga gcaagacata agtattaaag
      181 aagataagat tcaaagaatt aataaatgcc ttgaaagtat taaagaaaac aaagcaaata
      241 tttctaaaat atgtgaagct ataaacaaaa tagatgagga catcgctttt tactataaac
      301 atagtaagga aatcaaagac agctgtagta actggaagcc aacatgtgat gtttttcata
      361 agcatgaaga ttatataaaa gaccaactta ctacttacca agaaacccat gagaaagaca
      421 aaaaaatgta tcatgattat ataagtcaat atgaagatgt tttgaaacaa taccaactaa
      481 aatactcaga aacacatttt tcatgtaaat attacgagaa gaaaaaagaa catgaagaaa
      541 ttaaaaatag agtgttggca tgtactgaac aactaaaatt gaatgaaact actcttatga
      601 aatttctagt gcctgctcct ttcccatctc ttactaaatg gacattatac atagttaact
      661 tgagatacaa aacacaagat attcttaaat gtgccaacga ttttacaaaa agatcatttg
      721 aattggagaa agaagcaaat gatatggaaa tagaaattaa ttctttaaat aagcagatcg
      781 caagactttt tgaaagtaaa aaattttcag aagctctaga tgaaaagaaa aaaaatacag
      841 aaaagagaaa agaatttgaa gagagaattc ctgagaaaga tgagcaagtg tggaacacaa
      901 gttctcagag cagccagtta ctgccgtgcg accctcagag acttgtgaga ctcacaagta
      961 agagttcctc agaaccaaga ggtacagata aaaaagaaga aaattcagcc aatcagtcca
     1021 agtttgttag aagtgacttg agacaaaaag aaaatgatcc gcagatattt aatgactccg
     1081 gtatggatag taattcaaaa tcttcacatg ttccagctgt taaaagttca caaggtttta
     1141 tgcaattcag attgaatcaa ccaaattaca atcaatggat tgaaaaggaa catatagatg
     1201 ctgaatgtgg agataaagaa acagtaagac aactaagaga atcaaaatgt agtacacagg
     1261 ccctatacat agaacacttt ggaaagtcaa tagaagctga tagtgttgaa gaggaaaaag
     1321 ctgagaattt tccacaaact ccagaaactc cttcatttct aagaactcct gaagctctga
     1381 agacacctga atctgtggag aaaatgcagt tccctaaaag ccccttcttt gaaatatcta
     1441 aaaatgcagc atctgaagga cagaaacaaa aggattctcc tggattttca tttcttatga
     1501 gttatacctc tagatcacct ggactaagtt tatttgattc ttctgtatct gattcagaaa
     1561 tctcatcaga tcagtttaat gaacattacc ctgcagtaaa tctaaatcct ccttcatcac
     1621 aacaaggaat tggaaactta tttgggaaat cagaaggaga agatgccttc acattttctt
     1681 tctcatcaga ctcttctcac acatttggag ctggaaaaga cgactttagt tttccatttt
     1741 cttttgaaca ggatcaaaac acaatgtctt cctcttcctc aaaagatttt tcatcctcac
     1801 aaaataaaac acaatttatg tttttttgaa tcattatttt tgaactattt aatgctattt
     1861 aactatttga actatttaat aactgtaaaa ttttgtatta tcactgaatg caagatacat
     1921 ttttcccaat taaagtagta attgttacta cagttgaatt atttgattga agttatttag
     1981 atagtgaata tttgattttt atttgtgaca ctagctaatc attacttact ttgactttga
     2041 ctttgtaggc cctgtcagac aatcctttat tttagagatg tcaatacttc ttccataaat
     2101 tttttaagta atattaagtc tacttcttcc tggaatttga gttttagtct agtaactagt
     2161 agcactttag ttgttttgat aataacaaga atgccttcaa actatcagaa gatcttttaa
     2221 tgataactgt gcagaattta tactttagcc attaaaaatt ttgaatcact gggttttagt
     2281 tatgcttttg ggggggcagg atgctgaatg ttattctgat tataatttta aaaaattcat
     2341 gccaatgaca ataaaaatac aacagtaaaa ttccaatttt gtcaattatg ttagtatatc
     2401 tttaagaaag tgaaaagtga gagaaagatg aatatttgaa gattgtgttg ttatatcact
     2461 ggtttccctg gttaaacctt ttttt
//
