LOCUS       XM_017591208            1111 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus signal-regulatory protein alpha like 1
            (Sirpal1), transcript variant X1, mRNA.
ACCESSION   XM_017591208
VERSION     XM_017591208.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591208.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591208.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1111
                     /gene="Sirpal1"
                     /note="signal-regulatory protein alpha like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 21 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100360722"
                     /db_xref="RGD:2321536"
     CDS             65..991
                     /gene="Sirpal1"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     substrate 1 isoform X1"
                     /protein_id="XP_017446697.1"
                     /db_xref="GeneID:100360722"
                     /db_xref="RGD:2321536"
                     /translation="MLLLDTWANILHSALLLVLLLELKVADMKELKVIQPKKSVCVDA
                     GGSVTLNCTVTSLTPVGPIKWFRGVGHSRHLIYYFTGYHFSRITNASDATKRGNLDFS
                     IHISNVTPADAGTYYCVKFQKGIVEPDIEIQSGGGTELSVFVADMKELKVFQPKKSVC
                     VDAGGSVTLNCTVTSLTPVGPIKWYRGVGHNRHLIYNFTGYRFPRVTNASDATKRGNL
                     DFSIHISNVTPADAGTYYCVKFQKGIVEPDIEIQSGGGTELLVFELKTSHIAKILAAA
                     LIGCKLLLRFSMEINADEKPLKTAHKDTIRTT"
ORIGIN      
        1 tgtataagaa actgggaact catgagaact gattctgatc acaagaggtt tcttatcccc
       61 aaccatgctt ctcctagata cctgggccaa cattcttcac agtgccctgc tcttggtcct
      121 gcttctggaa cttaaagtag cagatatgaa agagctgaag gtgatccagc ctaagaaatc
      181 agtttgtgtt gatgctggag gatcagttac tctgaattgc acagtcacat ctctcacccc
      241 tgtggggccc atcaagtggt tcaggggtgt aggacacagt aggcatctga tatattattt
      301 caccggatac catttctcca gaataacaaa tgcctcagat gctacaaaga gaggcaacct
      361 ggacttttct atccacatca gtaatgtcac acctgctgat gcaggtacct actactgtgt
      421 gaagttccag aaaggaatag tagagcctga cattgagatt cagtctggag gtggcactga
      481 gttgtcagta tttgtagcag atatgaaaga gctgaaggtg ttccagccta agaaatcagt
      541 ttgtgttgat gctggaggat cagttactct gaattgcaca gtcacatctc tcacccctgt
      601 ggggcccatc aagtggtaca ggggtgtagg acacaatagg cacctgatat acaatttcac
      661 cggataccgt ttccccagag taacaaatgc ctcagatgct acaaagagag gcaacctgga
      721 cttttctatc cacatcagta atgtcacacc tgctgatgca ggtacctact actgtgtgaa
      781 gttccagaaa ggaatagtag agcctgacat tgagattcag tctggaggtg gcactgagtt
      841 gttagtattt gaactgaaga catcacacat tgctaaaatc cttgcagctg cactcattgg
      901 atgcaaacta ctcctgagat tcagcatgga aatcaatgct gatgagaagc cgctgaagac
      961 tgctcataaa gacacaatta ggacaacttg aattcaaaat ttctggttgt ttctctgcat
     1021 atgtatcatt gtcccagagc ttaagtgcta tgcatattga gttgtattct tgatatcttt
     1081 attttcacta ttaaaagaat ttaaatatgt a
//
