LOCUS       XM_039104381            3121 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus signal-regulatory protein alpha
            (Sirpa), transcript variant X7, mRNA.
ACCESSION   XM_039104381
VERSION     XM_039104381.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104381.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3121
                     /gene="Sirpa"
                     /gene_synonym="Bit; Ptpns1; SHPS-1"
                     /note="signal-regulatory protein alpha; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 33 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     176 samples with support for all annotated introns"
                     /db_xref="GeneID:25528"
                     /db_xref="RGD:3449"
     CDS             150..1028
                     /gene="Sirpa"
                     /gene_synonym="Bit; Ptpns1; SHPS-1"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     substrate 1 isoform X4"
                     /protein_id="XP_038960309.1"
                     /db_xref="GeneID:25528"
                     /db_xref="RGD:3449"
                     /translation="MEPAGPAPGRLGPLLFCLLLSASCFCAGASGKELKVTQADKSVS
                     VAAGDSATLNCTVSSLTPVGPIKWFKGEGQNRSPIYSFIGGEHFPRITNVSDATKRNN
                     MDFSICISNVTPEDAGTYYCVKFQKGIVEPDTEIKSGGGTTLYVLDNNAYYNWNVFIG
                     VGVACALLVVLLMAALYLLRIKQKKAKGSTSSTRLHEPEKNAREITQIQDTNDINDIT
                     YADLNLPKEKKPAPRVPEPNNHTEYASIETGKLPRPEDTLTYADLDMVHLNRAQPTPK
                     PEPSFSEYASVQVQRK"
ORIGIN      
        1 gtccacctta agaggaccaa gtagccagcc tgccgctccg acctcagaaa aacaagtttg
       61 cgcaaagtgg tgcgcggcca gcctctgggc agagggagcg gtgcttccac cgcctggcag
      121 ccctgcgcgc ggcggcgcag ccgcggccca tggagcccgc cggcccggcc cctggccgcc
      181 tagggccgct gctgttctgc ctgctgctct ccgcgtcctg tttctgtgca ggagccagcg
      241 ggaaagaact gaaggtgact caggctgaca aatcagtgtc tgttgctgct ggagattcgg
      301 ccactctgaa ctgcactgtg tcctccctga cgcctgtggg acccattaag tggttcaaag
      361 gagaagggca aaatcggagc ccgatctaca gtttcatagg aggagaacac tttcctcgaa
      421 ttacaaatgt ttcagatgct actaagagaa acaatatgga ctttagcatc tgtatcagta
      481 atgtcacccc agaagatgct ggcacctact actgtgtgaa gttccagaaa ggaatagtag
      541 agcctgacac agaaattaaa tctggagggg gaacaacgct ctatgtactc gataataatg
      601 cttactacaa ctggaacgtc ttcatcggtg tgggtgtggc gtgtgctttg ctagtagtcc
      661 tgctgatggc tgccctctac ctcctccgaa tcaaacagaa gaaagccaag ggctcaactt
      721 cttccacacg gttgcacgag cccgagaaga atgccaggga aataacccag atccaggaca
      781 caaatgacat caacgacatc acatacgcag acctgaatct gcccaaagag aagaagcccg
      841 ccccccgggt ccccgagccc aacaaccaca cagaatatgc aagcattgag acaggcaaac
      901 tgcctaggcc agaggatacc ctcacctatg ctgacctgga catggtccac ctcaaccggg
      961 cacagccaac ccccaagcct gagccatcct tctcagagta tgccagtgtc caagtccaga
     1021 ggaagtgaat ggggctgtgg ttggctctag gccccatccc cacaagtttt cttgtcctac
     1081 atggagtggc catgatgagg acaaccagcc agccagccct gtctccagaa ggccaggtgg
     1141 cacaggtcct aggaccaggg gtaagggtgg cttctgtctt ccctccgtgg ctctccaaca
     1201 cctcttggac acccatgtcc ccttcttctg gagctgggtg ttgcagaacc agagggggaa
     1261 ctggagaaag ctgcctagaa tccaagaagc gttgtgcctc agcccatcac actgggtctg
     1321 gatcctggtc ttggcaaccc ccaggttgct tccttgatgc tccagcgcct ggtcttctgt
     1381 gtggagaaga gttcaccatc tccatccaac ttgagcttcg gggccagact ccctttagat
     1441 cagaccgccc catgtgtgga agaactacac caggagtcaa caagttttca gccaacagtg
     1501 ctagcctccc cacctcccag gctgacgagc cctgaggaga aggaaccctc ttcccctaga
     1561 ccagcagaga ctccctgggc atgttcagtg tggccccacc cttccagtcc cagctcgctt
     1621 cctccagcta gcactaactc aacagcattg ctctgtggac gcctgtaaat tattgagaaa
     1681 tgtgaactgt gcagtcttga agctaaggtg ttagaaaatt tgatttgtgc tgtttagttg
     1741 ttgttgggtt tcttttcttt tctttttttt tcttcctttt tctttcttct ttttttcttt
     1801 tcccccttaa aacaacagca gcagcatctt ggctctttgt catgtgttga atggttgggt
     1861 cttgtgaagt ctgaggtcta acagtttatt gtcccggaag gattttctta tagcagaaac
     1921 agattttttt tccaattccc agcaccctga ggaccaagaa ggatccctct gttgtcattt
     1981 tcagcactca gcgtcactgg gatgagccag gctctgtccc cacagctggc ccttggcctc
     2041 catggctact gtggtaagtg cagccttgtc taatccagtg ctgacgttgg ccattcctca
     2101 ttgaggagag aaggtcagtg acaaactcac aagcactgca gaggcatacg gagagaaggg
     2161 acgctcggcc agcacccggt attccagcgc tctgaggtaa tcagtgcaag gagtctgtta
     2221 ttaccatcag acctcagcag gatcatactg gaacagaacc tgatcatacc tgtgacaaca
     2281 cagctgtgag ccagggcaaa ccaccccact gtcccagagt ctgggcagag gctctgaccc
     2341 ccacccttca aactggatgt cggggcctgg ctgggcccaa tggcaagcag atgttgcaac
     2401 cctagctatc tggtcttaac atgcagctca gtaagttgag gcgctaatgt ccccccatgc
     2461 cgggggattc ctggttccgg ctcttcaagt aagaagctga ttcaacctgc ctgtttctgt
     2521 aggtgtgaca gggatgtcag gaaaacagcc aggactcatc tctatagggc tggtgacctg
     2581 atacttccca taaaggcatc caggagttag ctgacccaat agtcagagtt gacctcactg
     2641 gcctagcaaa ccgtaacttg tctttggccc agccatggtc ttgggctgtc ttctaattcc
     2701 aaagggttgg taggtaaaga tccatcctct tcccctctgc caagagacat cacgtgtgta
     2761 cacacacaca tgcgcgcgcg cacacacaca cacacacaca cacacacaca cacacacacg
     2821 ggtgtatagg tgagttaaaa ggatgtcctc gctgacatcc taattttgtc ttaagttttt
     2881 ttggagggag aaaggaaaga ggcagggaag atacgtagct ctagctttag tcaggcagcc
     2941 tggggggatc cccaagccta tgtatggaac cctggtacga aagcgccctg tgaggagtgg
     3001 gatttcagtt ttatctgtag accagatgag aaggagaaag gccccatttt gtacatagtt
     3061 gcaacttaaa atttttggct tgcaaaatat ttttgtaata aagatttctg ggtaacaatg
     3121 a
//
