LOCUS       NM_001134712            2617 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus SIN3-HDAC complex associated factor (Sinhcaf),
            transcript variant 2, mRNA.
ACCESSION   NM_001134712
VERSION     NM_001134712.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Streubel G, Fitzpatrick DJ, Oliviero G, Scelfo A, Moran B, Das S,
            Munawar N, Watson A, Wynne K, Negri GL, Dillon ET, Jammula S,
            Hokamp K, O'Connor DP, Pasini D, Cagney G and Bracken AP.
  TITLE     Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells
            required for self-renewal
  JOURNAL   EMBO J 36 (15), 2216-2232 (2017)
   PUBMED   28554894
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Smith KT, Sardiu ME, Martin-Brown SA, Seidel C, Mushegian A, Egidy
            R, Florens L, Washburn MP and Workman JL.
  TITLE     Human family with sequence similarity 60 member A (FAM60A) protein:
            a new subunit of the Sin3 deacetylase complex
  JOURNAL   Mol Cell Proteomics 11 (12), 1815-1828 (2012)
   PUBMED   22984288
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EV762285.1 and BC168169.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC168169.1, EV762285.1 [ECO:0000331]
            RNAseq introns       :: mixed sample support SAMD00132261,
                                    SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-611               EV762285.1         32-642
            612-2617            BC168169.1         776-2781
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..2617
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /note="SIN3-HDAC complex associated factor"
                     /db_xref="GeneID:686611"
                     /db_xref="RGD:1595037"
     exon            1..114
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
     exon            115..261
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..799
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /note="family with sequence similarity 60, member A;
                     protein FAM60A-like"
                     /codon_start=1
                     /product="SIN3-HDAC complex-associated factor"
                     /protein_id="NP_001128184.1"
                     /db_xref="GeneID:686611"
                     /db_xref="RGD:1595037"
                     /translation="MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGL
                     HETRSGDICNACVLLVKRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNR
                     MKSSQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQSDEGSDTEMASSSNRTPVFS
                     FLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSSKKAAAEKPEEQAPAPLPIST
                     QEW"
     exon            262..361
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
     exon            362..488
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
     exon            489..639
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
     exon            640..2595
                     /gene="Sinhcaf"
                     /gene_synonym="Fam60a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caactgaaga actgctggag acaatctttc tggactcggc gctggcggag ggagtgcttg
       61 cagggggttg gcctggtgca gtttgcaccg tggggacgct gctgcgcgtg gaagctttga
      121 accagaagaa aagatgtttg gttttcacaa gccaaagatg taccgaagta tagaaggctg
      181 ctgtatctgc agagccaagt cctccagctc tcggttcacg gacagcaagc gctatgagaa
      241 ggacttccag agctgctttg ggctgcatga gactcgctca ggagacatct gcaacgcctg
      301 tgtgctgctt gtgaaaagat ggaagaagct gccggcagga tccaaaaaaa actggaatca
      361 cgtcgtagat gcaagagcag gccccagtct aaagacaaca ctgaaaccaa agaaagtgaa
      421 gactctgtct ggaaacagga tgaaaagcag ccagatcagt aagctgcaga aggagtttaa
      481 acgccacaat tctgatgctc atagcaccac ctcaagtgcc tctccagccc agtctccatg
      541 ctatagtaac cagtcagacg agggctcaga tacagagatg gcttccagct ctaatagaac
      601 tccggttttt tccttcttag atcttaccta ctggaaaaga cagaaaatat gttgtgggat
      661 catctataag ggccgttttg gggaagtcct catcgacact catctcttca agccttgctg
      721 cagcagtaag aaagctgctg ccgagaagcc agaggagcag gccccagcgc ctctgcccat
      781 ctccactcag gagtggtgac tgaggttcat ttagaaggga gcgaagaacg atttaaactt
      841 tgaaaagacc acaaaacaaa ctgaccctcc tatttttaac ttggatacct gctattctgc
      901 caaaagacat tttctagaat agtttttaat gggttactat ccttaccctt cacccaacca
      961 actctgaagc cagtctctag cttactgcaa gaaaagacgt gtacatacta tttaagatgc
     1021 tgagtatctc ataggaaagc tgaatgctgc tgtaaagtgc tctttaagtc ttttaaaatc
     1081 ccctctaatg aatggaatag gggaacttca ggggacagag atgggatttg ttgtgtgata
     1141 aaccatatgt agtttagtct ttctgtggag aggcagtggt tggggcattt ttaaatggct
     1201 ggctacactt cttttccctc atgataattt gtcataactc agtagcatga cctgtcccta
     1261 gaaggtagtt aaaatttttt acatgctaag gcgttgccaa ggttctgatg attcagacct
     1321 gtactactga ttattaagca ggacagactg agctttctgc aaatagcttg aaggaggaag
     1381 caatttctga gcacacaagt agcaccgtgt cgcctcccct tatcttcaca ttgataaaag
     1441 actttatgtg gatctcgtaa aacagaacca gatctccttc tggggaaggc ctgcctctag
     1501 gatgggcaag gtcctgtagg gatagaacca aagcatcacc acaaagtaga gaacacatgt
     1561 ggttagaaac tacttaatca gaatggctaa gtcctgggga cgcatggaca cagttgttga
     1621 tgctgcttgg ggcgtgtctc ctagagggct cacagtatgt aaataattga cattggtgtt
     1681 aacacgactg tctgggattc actgaaatcc acatgattca gttctagctc tggattacct
     1741 cagttgacct ttgtggaggt tttatctgta gagtagctct ttgccttgtc ataaacctta
     1801 ttagggtttg gggttctgtt gttttgttgt ttctctccca ctatttaaag ctgactagaa
     1861 gggttagttg tgtgttgagg ctaagttggg tggttgggtc ggcttcttaa cattaagata
     1921 gctgagtgga gctccacacc tggatctcaa tgactcggtt ggcttctcag tggaacccaa
     1981 ctgaggttgt ctaatcgcct cttctcaaaa gttcaggaaa aagagtagtg ccacgtgaga
     2041 cctcacagag gaggtgtacg tggctgcctt agtattctgt tgctcatgat tattttagaa
     2101 actggatttt taaagacttt tagagtttca taacaaggaa aagccacagt ttgtgtcatc
     2161 ctacagtttt acatcgtgta tttcttcctt ttagaaaaaa cctacctagt acaaggtacc
     2221 acatgcacag actgcccagt gaatgggtca attctccaca gccctggtgt agtgcagagt
     2281 ccagtcatta ccattctcct gcgttacttt gacatgggat tttttttttt ttttgtacat
     2341 tttggctgca gtattggtgg tagaatatac tttgatggat catctctact tctgtattta
     2401 tttatttatt actagacctc aaccacagcc ttctccccct ccactctctg cctgtaggat
     2461 gtactgtatg tagtcatgca ctttgtatta atatattaga aatctacaga tctgttttgt
     2521 actttttata ctgttggata cttataatca aaactttact ctagggtatt gaataaattt
     2581 agtcttatta gaaaaaaaaa aaaaaaaaaa aaaaaaa
//
