LOCUS       NM_001400839            4576 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SUMO-interacting motifs containing 1 (Simc1),
            mRNA.
ACCESSION   NM_001400839 XM_006253664
VERSION     NM_001400839.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Sun,H. and Hunter,T.
  TITLE     Poly-small ubiquitin-like modifier (PolySUMO)-binding proteins
            identified through a string search
  JOURNAL   J Biol Chem 287 (50), 42071-42083 (2012)
   PUBMED   23086935
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Townsend,P.J., Barton,P.J., Yacoub,M.H. and Farza,H.
  TITLE     Molecular cloning of human cardiac troponin T isoforms: expression
            in developing and failing heart
  JOURNAL   J Mol Cell Cardiol 27 (10), 2223-2236 (1995)
   PUBMED   8576938
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jan 27, 2022 this sequence version replaced XM_006253664.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.49389.1,
                                           SRR26643299.60209.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               JAXUCZ010000017.1  10111799-10112010   c
            213-2684            JAXUCZ010000017.1  10089698-10092169   c
            2685-2917           JAXUCZ010000017.1  10086512-10086744   c
            2918-2987           JAXUCZ010000017.1  10085835-10085904   c
            2988-3142           JAXUCZ010000017.1  10079175-10079329   c
            3143-3295           JAXUCZ010000017.1  10077474-10077626   c
            3296-3424           JAXUCZ010000017.1  10075656-10075784   c
            3425-3581           JAXUCZ010000017.1  10071715-10071871   c
            3582-3666           JAXUCZ010000017.1  10071508-10071592   c
            3667-4576           JAXUCZ010000017.1  10066855-10067764   c
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..4576
                     /gene="Simc1"
                     /note="SUMO-interacting motifs containing 1"
                     /db_xref="GeneID:100361684"
                     /db_xref="RGD:2319689"
     exon            1..212
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..3917
                     /gene="Simc1"
                     /note="platform element for inhibition of autolytic
                     degradation"
                     /codon_start=1
                     /product="sUMO-interacting motif-containing protein 1"
                     /protein_id="NP_001387768.1"
                     /db_xref="GeneID:100361684"
                     /db_xref="RGD:2319689"
                     /translation="MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVD
                     FIDLTRETRTRAKDRNGLCVIDLTRSEEENRPIATLDLTLEPVASSQKEPPSLQTCTN
                     LSGKEMIEAQGDRGTQPAAQRVINNDPVDLDLLEENMFEGSRPPTSISQDSVYPPEPN
                     CSSITYKGDLSFLTSLQLSSDVSPFSSTSNNSSSSSNQRTSLPCPQQDVPCQSQGLLC
                     SLQALSYPLRGSPCPPRASSCPPQALSCPPQALSCPSQTLSCPTQALSCPSQTVQCQL
                     QALPQPPQEVPCSTQNVPCPQQNIPSTPQDLPWHPRHPLYPSQDTLGLPQDVPGRPQN
                     VSYPQDMTQLQDMPWSLQDMPLSLQDVLQSLQDVPPLLGDVPQSPEVMQLPGYMTQSS
                     RNVIQSSAGVIRSSGGVMQPSGCMMQPSGGVTQSLRSAIQSSGGVMQSSGVTQSLRSV
                     MQSSGGVMQSSGVTQSSGGVTWSLRSVMQSSGCMMQSPGGVMLSAGDMMQSSGGATRS
                     LRSMMQSSGCMMQSPGGVTQSSGSVMQSLRNVIQSSGGVTQSSGGVIQSSSGVPQSLR
                     DRMQSPGSVSQSSGDVIQSPRGASPASGDVIKSQGGMPRSLRDRMQSPGGVPQSSEDV
                     IQSAGGVSPASGDAIQSPGGVSPASGDAMQSSGGVTPSLGDVPQSSGGVSPASGDAMQ
                     SPGGVTPSLGDAMQSPGGVSPASGDAMQSPGGVSPSLGDVPQSPGNMLESLGNTPNLS
                     GDVSHVPQELLDLAKGRPKLSLNAVQNRHSPMTISAPSSPSCSANPLSQQSEFSSEKR
                     PWLTVSNSSAREERSLPQSATPGSAQIQGQIAQAGVYNRPCLHRLKYFLRPPVHHLFF
                     QTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREI
                     VAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTL
                     PGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAV
                     TENALTPPQDETQTSPGPGVLKTSSDHLSPQPNLARNTNQLIVCQLQRMLSIAVEVDR
                     TPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLP
                     LSLAQALYFLNNSTSLLKCQSDKSQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDR
                     KDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLVHILGEPLVPQLQDKVHLLKLLLF
                     YAADLNPDTEPASER"
     exon            213..2684
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2685..2917
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2918..2987
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2988..3142
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3143..3295
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3296..3424
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3425..3581
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3582..3666
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3667..4576
                     /gene="Simc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagtcgctt cagcagctgg accccgagtc gcagtcgctg gggccgctcg ccgctcgcgt
       61 ggggctcagc cgggcccgta gccatggagg actttatcgt gatctccgac gacagtggct
      121 ccgagagctc ggccgggacc cgctcgggca gggcgcggag gctgcgccgg gccctgtccc
      181 ggacccccgg cgcgctgccc cgccgaaccg tggactttat tgacttaact agagaaactc
      241 gaacaagggc aaaagatcgg aatggactct gtgtgattga tctgacaaga agtgaggaag
      301 aaaataggcc tattgccact ctcgatttga ctttagaacc tgtagcttcc tctcagaagg
      361 agccacccag tcttcagaca tgtaccaatc tctcaggcaa agagatgatt gaagctcaag
      421 gagacagagg cactcagcct gcagcacaga gagtcattaa caatgatcct gtagatttgg
      481 atttgttgga ggaaaacatg tttgaaggtt ctcgaccccc tacatccatc agccaggact
      541 ctgtttatcc accagaacca aactgtagct caatcacata taaaggtgac ctcagcttct
      601 tgacaagcct acagctctct tcagatgtta gccccttctc ctccacaagc aataacagta
      661 gcagcagcag caatcagagg acctctttgc catgcccaca gcaagatgtg ccttgccaat
      721 cacaaggctt gctatgctca cttcaggcct tatcataccc attaagaggt tcaccatgtc
      781 caccacgagc ttcctcatgt ccaccacaag ccctgtcatg cccaccacaa gctttgtcat
      841 gtccatcaca gactttgtca tgcccaactc aagccttgtc atgcccatca cagactgtgc
      901 agtgccagct ccaagcattg cctcaaccac ctcaagaagt gccatgctct acccaaaatg
      961 taccatgccc tcagcagaat atcccaagca cacctcaaga cttaccatgg catcctcgac
     1021 accccctata cccatcccaa gacactttgg gcctacctca agatgttcca ggccgacctc
     1081 aaaacgtatc atatccacaa gacatgacac aactacaaga catgccatgg tcactgcaag
     1141 acatgccgct gtcactacaa gatgtgctac agtcactgca agatgtgcca ccattgctgg
     1201 gagatgtgcc acagtcgcca gaagtgatgc agttaccagg atatatgaca cagtcatcaa
     1261 gaaatgtgat tcagtcatca gcaggtgtga tccgatcatc aggaggtgtg atgcagccat
     1321 caggatgtat gatgcagcca tcaggaggtg tgacccagtc actaagaagt gcaatacagt
     1381 catcaggagg tgtgatgcag tcatcaggtg tgacgcagtc actaagaagt gtgatgcagt
     1441 cgtcaggagg tgtgatgcag tcatcaggtg tgacgcagtc atcaggaggt gtgacatggt
     1501 cactaagaag tgtgatgcag tcatcaggat gtatgatgca gtccccagga ggtgtgatgc
     1561 tgtcagcagg agatatgatg caatcatctg gtggtgcgac acggtcacta agaagtatga
     1621 tgcagtcatc aggatgtatg atgcagtccc caggaggtgt gacccagtca tcaggaagtg
     1681 tgatgcagtc actaagaaat gttattcagt catcaggagg tgtgacacag tcatcaggtg
     1741 gggtgataca gtcctcatca ggtgtgccac aatcattaag agataggatg cagtcaccag
     1801 gaagtgtctc acagtcatca ggagatgtga tacaatcacc aagaggtgcg tcaccagcat
     1861 caggagatgt gataaagtca caaggaggta tgccacggtc attaagagat aggatgcagt
     1921 caccaggagg tgtgccacag tcatcagaag atgtaataca atcagcagga ggtgtgtcgc
     1981 ctgcatcagg agatgcaatt cagtcaccag gaggtgtatc acctgcctca ggagatgcaa
     2041 tgcagtcatc aggaggtgtg acaccatcat taggagatgt gccacagtca tcaggaggtg
     2101 tgtcacctgc atcaggagat gcaatgcagt caccaggagg tgtgacccca tcattaggag
     2161 acgcaatgca gtcaccagga ggtgtgtcac cagcatcagg agatgcgatg cagtcaccag
     2221 gaggtgtgtc accatcatta ggagatgtgc cacagtcacc tggcaatatg ttagagtcac
     2281 ttggaaatac accaaactta tcaggagatg tgtcacacgt accacaagag ttattggatt
     2341 tggcaaaagg caggcccaaa ttgtccctga atgctgtgca aaatcgccat tctcctatga
     2401 ctatctcggc tccatcctct ccaagctgct ctgctaaccc actgtctcaa cagtctgaat
     2461 tttcctcaga aaaacgtcct tggctcacag tctcaaacag ctcagccaga gaagagagat
     2521 cactgccaca gtctgccacc cctggctctg cccagataca gggacaaata gcacaagctg
     2581 gggtgtacaa taggccttgc ctgcatagac tgaagtactt cctacggcct ccagtacatc
     2641 atctcttctt ccagacgtta ataccggata aagacacacg agagagcaag ggtcagaaat
     2701 tagaacccat ccctcatcga agactaagaa tggtgacaaa cactattgag gaaaacttcc
     2761 ccttgggaac tgtgcagttt ttaatggact ttgtttcacc ccaacattac ccacccagag
     2821 aaattgtggc tcacatcatc cagaaaatcc tgctgagcgg ctctgagact gtggatgtcc
     2881 tcaaggaggc ctacatgctt ctcatgaaaa tccaacagct gcatccagcc aatgccaaga
     2941 cagtggagtg ggactggaaa ctgctcacct atgtcatgga ggaagagggg caaactttac
     3001 ctggacgagt tctctttcta cggtacgtgg tgcagaccct ggaggatgac ttccagcaga
     3061 tcctgaggag acagcggcag cacctacagc aatccattgc aaacacggtt ctgtcatgtg
     3121 acaaacagcc ccacaacgtc agagatgtta tcaagtggct ggtcaaagca gtgactgaaa
     3181 atgcattaac tccaccccag gacgagacgc agacctctcc aggaccagga gtcttgaaaa
     3241 cgagcagtga ccatctgtca ccccagccta acctggccag gaacaccaat caactgattg
     3301 tgtgtcagct tcagaggatg ctgtccatcg ccgtagaggt agacaggact ccaacctgca
     3361 gctccaataa aatagcggag atgatgtttg ggtttgtgct ggacatcccc gagaggagcc
     3421 agagggagat gttctttact accatggaaa gccaccttct gcgatgcaaa gtcttagaga
     3481 tcatattcct ccacagctgt gagacaccca cccgtctccc cttgtctctg gcccaggccc
     3541 tctattttct gaacaactcc acatccctgc tcaagtgtca gtcagataaa agccagtggc
     3601 agacgtggga tgagctggtt gaacatctgc agttcctgtt gtccagttat caacatgtgc
     3661 tgagagagca cttacggagt tcagtaattg atcggaaaga cttaatcatc aaacgaatta
     3721 agcccaagcc ccagcaagga gatgacatca cagtggtgga tgtggagaag cagattgagg
     3781 ccttccgtag ccgcctggtc cacatattgg gagaaccttt agtcccccag ctccaagaca
     3841 aagtgcattt gttgaagctg ctgctcttct acgctgcgga cttgaacccc gacacagagc
     3901 ctgcctcaga gcgctgaggc agccagactt ctaagcactg agcaccaaga atacctcctg
     3961 actgtcgcca gctacttaga agccctgaag tatgaacggt agttaggaat atcacaggac
     4021 caaacctatc ttatttatct gtaggttgta ataactttat aactcttcag tatatatctt
     4081 tttttataat ctttatccta gcctattcaa atttggctta aatatacaag gtgtatatat
     4141 tttttattaa attatttatc tatgctttta aaacaggcag tgatatgcac tatatgtcca
     4201 acatttccac gcaagatggg aaagaaccct tctgctgagc gatccatcag tgttacaatg
     4261 tcaaggtact gacggcctgt ttctggaaag acgttagctt ttcctgaaca gaccacattc
     4321 tatactagac tttttacatt gcccatgaat gtgactctgt ggccagttta ttaaatctaa
     4381 tataacaaag caggcaaaga cacaaaagga taaagtctct taaacatctg atgtcaatat
     4441 gacaataaaa agcttacaat gctcgggctc cactacgggg caggcagatg gacaagaaag
     4501 acgtgggctt gagaaagtag taaagatttt tatttgtcaa tacaagataa cacaaataaa
     4561 ttaattttta caacaa
//
