LOCUS       NM_001401814            3037 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus sialic acid binding Ig-like lectin H (Siglech),
            mRNA.
ACCESSION   NM_001401814 XM_008759473
VERSION     NM_001401814.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3037)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 25, 2022 this sequence version replaced XM_008759473.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ232259.1, SRR26643284.759.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-508               JAXUCZ010000001.1  115729491-115729998
            509-787             JAXUCZ010000001.1  115730171-115730449
            788-835             JAXUCZ010000001.1  115730623-115730670
            836-929             JAXUCZ010000001.1  115732766-115732859
            930-1010            JAXUCZ010000001.1  115733709-115733789
            1011-3037           JAXUCZ010000001.1  115737933-115739959
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..3037
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /note="sialic acid binding Ig-like lectin H"
                     /db_xref="GeneID:361584"
                     /db_xref="RGD:1310401"
     exon            1..508
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1002
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /note="myeloid cell surface antigen CD33"
                     /codon_start=1
                     /product="sialic acid binding Ig-like lectin H"
                     /protein_id="NP_001388743.1"
                     /db_xref="GeneID:361584"
                     /db_xref="RGD:1310401"
                     /translation="MLLSRLLPLLWVFKWASGVCFLLPGMFRDINQSLKLELNSVTVQ
                     EGLCVLVPCKFIVNPRNMLSDLVFGYWYHEEKNTQLDSLVATNNPYQLVRGTQSRFHL
                     SGDLRFNDCSLDIRDAQKSDSGSYFFSLKKEGMTWNFCEEKISVHVTDLTHTPSISIP
                     QTLELGHPTDVICSVPWACERGTPPIFSWMSAAPISLGPTTTFSSVLTLTPRLQDHGT
                     YLTCQVTFPGVGVTVQKTVQINVTYTAQNSTSHVSGRASPGKTEHLAEVVQVAMGEAA
                     IKFLLLGICFFFLSMRPHEKRVERPATHVDHSATVMD"
     exon            509..787
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
     exon            788..835
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
     exon            836..929
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1010
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..3037
                     /gene="Siglech"
                     /gene_synonym="RGD1310401"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttcctata agcgagtcat ccagtttgct cagtcacagg agcccaggcc atctgctggg
       61 atgctgctgt cccggctgct acccttgctc tgggtgttta agtgggcatc tggagtctgc
      121 tttcttctcc ctggaatgtt cagggatata aatcagtcac tgaaactaga gttaaattct
      181 gtgacagtgc aggagggtct gtgtgtccta gtgccctgca aattcattgt gaaccccaga
      241 aacatgctgt cggatcttgt ctttggatac tggtaccacg aagaaaagaa tacacagctt
      301 gattctctgg tggctacgaa caacccatat caacttgtgc gggggacgca aagccgattt
      361 cacctctctg gggacctgag gttcaatgac tgctccttgg acatcagaga tgcacagaag
      421 agtgacagcg gttcttactt cttcagcctc aaaaaagaag gcatgacgtg gaatttctgc
      481 gaggagaaga tctctgtgca tgtgacagac ctcactcaca cccccagcat cagcatccca
      541 cagacactgg agcttggtca tcctaccgat gtgatatgct ctgtgccctg ggcttgtgaa
      601 cggggaacac cccccatctt ctcttggatg tcagctgccc ccatatccct gggccccacg
      661 accaccttct cctcagtgtt gaccctcact cccaggctcc aggaccatgg aacctacctc
      721 acctgtcagg tgaccttccc tggagttggt gtgactgttc aaaagactgt ccagatcaat
      781 gtcacctata ctgcacagaa ctccacaagc catgtctctg gaagagctag cccagggaaa
      841 acagagcacc tggcagaggt ggtacaagta gccatgggag aagcggctat caaattccta
      901 cttcttggga tctgcttctt cttcctcagc atgagacccc atgagaagag agtggagagg
      961 ccagcaacac atgtggatca ttcagccact gtcatggatt agtctctcag gctgtggagg
     1021 cagctggcat cacagcatgg atccaccaca cccaggtcaa gaaagccatg gatgaagatg
     1081 ccaactggac tgtctccaga ctatggatct attaaaatta aatttttgtc tcgctctaga
     1141 cccttcttct ccctgcccct ctgcattctc taaagccttg tgttttgttc tatgggtatg
     1201 aatatagggt tatggtccca cccctacagc cctcaagcct gaaactagga actgaggaga
     1261 tggatacagg gaaagtatta actagtgtgt ctatagacca ctaacccata atcatcttga
     1321 cctctgctcc ctgaggtcga ccttaaactc cactttaagt gtttggttgt attgaaaaaa
     1381 aaaaaagcaa ggatatggga ctttatcttt tgagatagaa atacacagtt tacaattctg
     1441 tgtgccctgg gactgggccc ctttgttatc aggaacaaga gagttcttgt tgtggggctg
     1501 gggatttagc tcagtggtag agcgcttacc taggaagcgc aaggccctgg gttcggtccc
     1561 cagctccgaa aaaaagaacc aaaaaaaaaa aaaaagagag agagagagag agttcttgtt
     1621 gcaaaaattt ggattatgag accaaagttt cctaaaattt ctttttaaaa gattctgacc
     1681 tttggaaacc ctgggataat cagattctat gccacaggaa aggatagaat ctatcaaggg
     1741 atagagttga tcattcccag ccagaaatca gtcaggactg ctggtcctcc ttaggtaccc
     1801 agccctcaaa ttacacaggg taggaccaaa ccaaactgcc atcccattga ctgacaaaac
     1861 tcactgtgac aacccaaatt aagattagag aatttacaag agactaaaat ttgtctaata
     1921 cccaaaacct tcaatataca cacttcccct tattctgatt cctactcttc tgccttgtgg
     1981 gttaactcat ctggaaaaca gcaatactac tgagtacttg gtgagcatgt actaatggtt
     2041 tgattaaaag tgccttttct gatgctttcc aaactaagta gacagattga tcaggactta
     2101 gaggtattaa aagcttccat ttctgaatta aactaccgtt aaattccctt gcagagttgg
     2161 agaggcttag acttagttct cctgagataa atgaaactat gtgtggcttt ggaagaaacc
     2221 tgttatctct atgctaacta atcaagagta attaggagaa aacttttttt aaaaatgtgt
     2281 cataaaaaaa caaacaagca aataaatctc agtactcagg aggcgaaggc aggcaaatct
     2341 ctgtgagttc aaggccagag aatctacaga atgaggttca ggatagccag agctacacag
     2401 agaaactctg tctcaaaaaa aaaggaaaaa aaagaaaaga aagaaaaaag aaaagggaga
     2461 aagagtaaaa aagaaaggag gaaggaacaa acaaaggaac tcaaaacaag aagaaacaaa
     2521 gacaaaaatc acacaaaatc agtatttgtc ttcttggtca ccctggccag ctactcttct
     2581 atcaacactg actaggcctt taagtctcat tctgattggg ttaacatcgg ggccctgcat
     2641 cttaaactaa aatagggtaa gtccacaact taactcattc actaagacag tggggaatac
     2701 aacagggtcc caaaccttag taggccttta gaccttagca ctcctgattc tgtgacagaa
     2761 gtaccattca ggccataaaa ctcagcacat aaacagttac accagccaaa atgaaaacaa
     2821 agacctaacc catcaaagtc cagagttctg ggaaagtctt taaagttact aacctagctt
     2881 tttggcttct gtagctctgc ttctggctaa ctgttcttgt tagtacaagt atgttaaaag
     2941 ttcaccccga aaaagattta gtgatacact agcatcccaa acacccagca tcttagtata
     3001 gtcaccaact gactaataaa gattttctgt tggctta
//
