LOCUS       XM_006246367            4001 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus shroom family member 1 (Shroom1),
            transcript variant X1, mRNA.
ACCESSION   XM_006246367
VERSION     XM_006246367.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246367.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246367.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4001
                     /gene="Shroom1"
                     /note="shroom family member 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 2 long SRA reads, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:287285"
                     /db_xref="RGD:1308066"
     CDS             578..3154
                     /gene="Shroom1"
                     /codon_start=1
                     /product="protein Shroom1 isoform X1"
                     /protein_id="XP_006246429.1"
                     /db_xref="GeneID:287285"
                     /db_xref="RGD:1308066"
                     /translation="MSLGDRRNPGARLGLEPQSPPGPPTPVPNCTTMETTMGTGRDRT
                     SQASDTESLDLRRLSTRADSAYSSFSTASGGPETRTPSPGTERLPYLDWDYVRVVWGN
                     RSPISKDAVPSMTQGPGPAVVAGHSDPRPPEVQGNAGPLSRQDTPLLYALTAEAEATT
                     RTAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPGRLRPALPARPPTGHV
                     RSASSSQELGEAEPARAAVPALGAAGRGHLASQQRLCCFSEPGKLHRVGWSGGPTGEG
                     LREAYSTQELQRGMHAKSKGLQETQSLSSTELNSRSANLASAHRPAGRSQSVSGCTGS
                     ERTVATVQVVPQRADTPRPPLQTKLSRFLTQKEAAVVCPGEALQAKPAGCARRNPETT
                     VSTPGPSLPDDEVFLKEAKTASPQDSHAPHGLPTSTSDRPSENGLSKKAGQITVSAER
                     ALHEVPGIAGADNCWQGVNGSVHISRPTSRSTPETTNDDTPTFDTNGTTDPSAATEKN
                     PLKPPSVDVLTTSDSETPGSPHHASLTWGQLGSKPTWPSRHFEELVQELARLDPFLSD
                     TLAAQPGPEPPLGLLDGLFPAEEIRSAMRPAREEAGEKAGASEEGSCGCHFTQELPTS
                     QEASRSENSTPDPVPDQSSGQGFPEGNSTQAKKVELARLLQKMLQDLHAEQERLRGKA
                     ADWTRHNGALEAAVSQACTPRELERFRRFMTDLERVLGLLLLLGSRLTRVNLALARAG
                     SDSDPDERASLLQRLLLLQRQQEDAKELKEHVARREQTLRQVLERELPAEHLRSYCVL
                     LAAKARILSQQRSLDDRIRFLKEQLDTIWSDLSHHPLSPRLSWAPGIRPLDKQPFLAT
                     LI"
ORIGIN      
        1 agccttccga agcacactca gagggaagac aggagacagg aactccaggc gcatctgttt
       61 tctcggtgga gtttcagaga accggccagg agagatggtc cagtggataa aggttcatct
      121 caccaaacca gatctcctga gttggatccc agtcctccac agggtggaag taaagaaccc
      181 actcctccac aagggagctt cccccattac ttatttacca aataagtaag taaataaata
      241 aatgtaactt tattttaaga ttaaaaaaaa aaaaaaaagg gtgagccttt gttgctccgg
      301 ggcgggtttg acctctgcac cgaggagcct gttggtccta aattcttgcc tgctcgcttg
      361 gagcgagtgc gatcgccctg gggcttgagt tctctgcagt ggttagaggt ccaggacccg
      421 ggactgggac cacgtacaga atcacaagag gaaggggcgc ggctcccaga gccccgccac
      481 cactcgagac tcccgcccct cctcggccgg aggtggcgcc tcccctgcgg cggccgggga
      541 ctggaggtgg cgtcgggagc tggagcccgg ggctcggatg tcactgggtg atcgccggaa
      601 ccctggagcg cgtctcgggc tggagccaca gtccccacca ggtccaccaa ctccagttcc
      661 caactgtaca actatggaga caactatggg tactgggaga gaccgcacct ctcaggcctc
      721 agacactgaa agcctggact tgcgacggct gtccactcgc gccgactctg cctacagctc
      781 tttctccacg gcgtctggtg gtcccgagac tcgcacgccg tcccctggca ccgagcggct
      841 cccttaccta gactgggact acgtgcgagt ggtttggggc aaccgatccc ctatctcgaa
      901 agacgccgta ccttcaatga cccagggacc tgggcctgct gtagtcgctg ggcacagtga
      961 cccacgaccc ccagaggttc aggggaacgc gggaccacta agcagacaag acaccccgct
     1021 gctgtacgcg ctgaccgcgg aggctgaagc tacaacacgc accgcagagc cgcccagccc
     1081 gccagcttcg cgggccgcct accgccagcg gctgcagggc gcacagcggc gagtgctgcg
     1141 ggagacgtcc ttccagcgaa aggagctccg catgagcctg ccgggccgct tgcgtcctgc
     1201 actccccgcg cgacctccca cggggcacgt gcgctccgcc tccagcagcc aggagctagg
     1261 agaagcggag ccggcgcgcg ccgcggtccc agctctgggg gctgctggcc gggggcatct
     1321 cgccagccag cagcggctgt gctgcttctc ggagccaggc aaattacatc gtgtgggttg
     1381 gagcggtggg cccacgggcg agggcttgag agaggcttat tccacgcagg agttgcagcg
     1441 tgggatgcac gctaagtcca aagggctgca ggagactcag tccctaagct caacggagct
     1501 gaactcccgg tccgcgaatc ttgccagtgc ccatagacct gcgggtcgga gtcagagtgt
     1561 ttcaggctgc acgggttcag aaaggactgt ggccactgtc caggttgttc ctcaaagagc
     1621 agacaccccc agaccaccgc ttcagaccaa gctttccagg ttcttgactc agaaggaggc
     1681 tgcagtggtg tgtcctggag aggctctcca ggccaaacca gctggctgcg ctcgaagaaa
     1741 ccctgagacc acggtgtcta ctccgggccc ctccctccct gacgatgaag tgttcctgaa
     1801 agaagccaaa acagcatcac ctcaagattc ccatgcgccc cacgggctcc caaccagcac
     1861 ctccgaccgg ccgtctgaaa atggcttaag caaaaaagct ggtcagatta cagtctcagc
     1921 agagagagct ctccatgagg ttccagggat cgcaggagca gacaactgtt ggcaaggggt
     1981 gaatggctct gtgcatatct ccagacctac aagccgtagc actcccgaga ctacaaacga
     2041 tgacacccca acctttgaca ctaatgggac cactgacccc tctgcagcta cagagaaaaa
     2101 ccccctcaaa cctccctccg tcgatgtctt gacaacttca gactctgaga ctccagggtc
     2161 ccctcaccac gcttccctga cctggggcca gctaggttcc aagcctactt ggcctagtcg
     2221 gcattttgag gagctggttc aggagttggc cagactggat ccctttttga gtgatactct
     2281 tgccgcccag cctggtccag agccacctct gggcctgttg gatgggcttt ttcctgccga
     2341 agagatccgg agcgcgatga ggccagcccg tgaggaggct ggagagaagg cgggtgcatc
     2401 ggaggaaggg tcctgtggat gccacttcac ccaggaactg ccaacttccc aggaggcgtc
     2461 aaggtctgaa aattctaccc ctgaccctgt gcctgaccaa tcaagtggcc agggattccc
     2521 agaaggaaac agcacccagg ccaagaaagt ggaactagcc cgcctcctcc aaaagatgct
     2581 gcaggatctt cacgctgagc aggagcgact gcgggggaag gccgcagact ggactcgaca
     2641 caacggagct ctggaggctg cagtgagcca agcctgcact ccccgggagc tggaacggtt
     2701 ccgccggttc atgactgatc tagagcgcgt gcttggtctt ctactgctgc taggcagtcg
     2761 cctgacccgt gtgaacctcg ccttggctag ggcgggctca gacagcgacc cggatgagag
     2821 ggcctctctg ctgcagcgac tcctgcttct gcagcgacag caagaagacg ccaaggagct
     2881 gaaggagcac gtggctcggc gggagcaaac cctgcgtcag gtgttggagc gggagctgcc
     2941 cgcagagcat ctacgctcct attgtgtgct gctggccgcc aaggccagga tcctgtcaca
     3001 gcagcgcagc ctggacgatc gaattcggtt ccttaaggaa caactggaca ctatctggag
     3061 cgacctcagc catcatcccc tttctcccag actatcctgg gccccaggaa tccgtcctct
     3121 agacaaacaa ccttttcttg ctacccttat ctagttacag gtggcggagg tgggaacact
     3181 gtcccaggct cactcacaac tggagccttg ctttatacag agagctttcc cttgagggac
     3241 tagggaggag tcagaccagg ccttcccagg acacaccttc ccacagtgtt ctcctgtgac
     3301 cttattcgat ttgtaattat ttaggaatta atttgtgggt tttaaaaact gcagtattca
     3361 aagcctggcc tggaggtgct gttgtaatcc caactatatg ggaggctgag gtggggagat
     3421 tttgaggtca aggcctatct gggctacaaa ggaaactcaa agccagcctg ggggacctag
     3481 gagactctgc ctcaaaataa atcataaaaa gaggactgca gagatgggag gcgggggggg
     3541 gggggggctg gaggtgagaa gctggagaga cggcccagga gttaagacca cttgctgttc
     3601 ttccagagca tttgggttcc atcatccatg ctttatgact cacagcccag gcaggggatc
     3661 tgacactgtc tggtttgcac aaaggtggca cacatacacg caagcaaaac actcccaaat
     3721 aaacaaataa atataagaat aacttaaaag agaaggctac agatacagct gggttatgga
     3781 gtgcccactt gtcatgtgag accctggggt caatccctag tacggcatca acgaaaacaa
     3841 aacacgagga aggatcacga accctgcacg ctccccatgt gatggcgagt ccctctgtca
     3901 gagtcggtgg gagacagaag ggttgagaga ggagaacact gcagcttaag gtgtaaacga
     3961 gtatcgcatt ttattttcta ataaattctc taataagagc a
//
