LOCUS       XM_039085502             970 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sedoheptulokinase (Shpk), transcript
            variant X1, mRNA.
ACCESSION   XM_039085502
VERSION     XM_039085502.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039085502.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..970
                     /gene="Shpk"
                     /gene_synonym="Carkl"
                     /note="sedoheptulokinase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 49 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:287479"
                     /db_xref="RGD:1308004"
     CDS             108..836
                     /gene="Shpk"
                     /gene_synonym="Carkl"
                     /codon_start=1
                     /product="sedoheptulokinase isoform X1"
                     /protein_id="XP_038941430.1"
                     /db_xref="GeneID:287479"
                     /db_xref="RGD:1308004"
                     /translation="MTSRPVTLGIDLGTTSVKAALLEAAPGHPSGFVVLASCARAAGA
                     ETESAAAGPQGREQDVTRIIQALNECLDALPPRQLQRVGAIGVSGQMHGILFWKTGQG
                     CEWTERGSAPVFEPRAVSHLVTWQDNRCNSGFLASLPKPASHLSVATGFGCATIFWLL
                     KNSPEFLKSYDVAGTIQDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNSDMSRTP
                     GPCEPPSFRASNLSPEIQLKAGGS"
ORIGIN      
        1 gagctgttaa aagattggca gggacgcccc gtcccctcgc tgccctccgg gggtgtagtt
       61 ccttagcctg cggttcaagc cgcctgagtt gtgctgtcac cgctgccatg acttcgcgac
      121 ccgtcactct cggtatcgac ttgggcacca cgtccgtaaa ggccgccctc ttggaggctg
      181 cacccggcca cccatccggg ttcgtggtgc tggcgagctg cgcccgggct gcgggggcag
      241 agaccgagag cgcggctgcc ggaccccagg ggcgggagca ggatgtgact agaatcatcc
      301 aagctctaaa tgaatgcctt gatgcccttc ccccgaggca gctccagaga gtcggggcca
      361 tcggagtgtc aggacagatg catggcatcc tattttggaa aacaggccaa ggctgtgaat
      421 ggacagagag agggtctgcc cctgtatttg aacccagagc cgtgagccat ttggtcacat
      481 ggcaggataa ccgttgtaac agtggtttcc tggcttctct gcccaagcca gcatcccatc
      541 tcagcgtggc cacaggattc ggctgtgcaa ccatcttctg gcttttgaaa aacagcccgg
      601 agtttctgaa gtcctatgac gtggctggca ccattcaaga ctatgtggtt gctatgctgt
      661 gtggcttgcc aagacccctg atgtctgacc agaacgctgc tagctggggc tattttaaca
      721 cccagagcca gagctggaac tcggacatga gcagaactcc agggccctgt gagccccctt
      781 ccttcagggc ctccaatttg agccctgaga tacagctgaa agcaggtggt agttgagact
      841 gcaaatggca ggttttccta cccaccttct ccccgacatt gcagagccag gcagcttggc
      901 aggcagaact tctcacacgt ggtttgaaat cccagcaggg acggaggtgg gcgtagccct
      961 gggtgactta
//
