LOCUS       NM_001402233             881 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus shisa like 2A (Shisal2a), mRNA.
ACCESSION   NM_001402233 XM_001070397
VERSION     NM_001402233.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 8, 2022 this sequence version replaced XM_001070397.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1850424.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMN16676789
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-476               JAXUCZ010000005.1  128354752-128355227 c
            477-616             JAXUCZ010000005.1  128348925-128349064 c
            617-881             JAXUCZ010000005.1  128339304-128339568 c
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..881
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /note="shisa like 2A"
                     /db_xref="GeneID:689322"
                     /db_xref="RGD:1593542"
     exon            1..476
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
     CDS             295..864
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /note="membrane protein FAM159A; family with sequence
                     similarity 159, member A"
                     /codon_start=1
                     /product="protein shisa-like-2A"
                     /protein_id="NP_001389162.1"
                     /db_xref="GeneID:689322"
                     /db_xref="RGD:1593542"
                     /translation="MSGACSSYVSAEQEVVRGFSCPLPGGEAAAVFCCGFRDHKYCCD
                     DPHSFFPYEHNYMWWLSIGALVGLSTAAVVLLAFLITAFVLCYLFISSKPHTKLDPGL
                     SLQTTGSKEMSPDHQGLNTAIMMEVPGVSSPRQSSSLNTRLESNERQTVGPRGLLQNQ
                     FMATVTASHIPDSPEEASVPTPDPYGPAP"
     exon            477..616
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
     exon            617..881
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atccaccttg cctctctggc tgtcgtgtgg tgtctcggcc gcgggggcga ggaggcagcc
       61 cccgccccgg actgggtccc cgcgcacgca cccctgcctc cgcgcccgcg cacctggcca
      121 ccgggtctcc gggcgccccg tcctcaccgc gcgcctctga gcctttcgcc gtgcctttct
      181 ctgcagcgcc tctacctgtg cacttccctg cctgcctggc cctcgggctc tgctgggtct
      241 ccggccgccg tctctcactc gcccgccgtc tgtccggggg actaaggagg cacaatgagc
      301 ggcgcctgct cgagctacgt gagcgcggag caggaggtag tgcgtggctt cagctgcccg
      361 ctgccggggg gcgaagcggc tgctgtcttc tgctgtggct tccgcgacca caagtactgc
      421 tgcgatgacc cgcacagctt cttcccctac gagcacaact acatgtggtg gctcagcatc
      481 ggagcacttg tgggcctgtc cacggcagca gtggtccttc tggccttcct catcactgcc
      541 tttgtgctct gctacctgtt catcagctca aagcctcaca cgaagctgga cccaggccta
      601 agcttacaga caacaggctc caaggagatg tcacctgacc accaaggttt gaacacggca
      661 atcatgatgg aggtgccagg ggtaagctct cccaggcaga gttcatcctt gaacacacgg
      721 ctggaaagca atgagaggca gactgtgggt cccagaggtc ttctccagaa ccagttcatg
      781 gctacagtga ctgctagcca cattccagac agccccgaag aggcctctgt ccccacccct
      841 gacccatatg gaccagctcc ataaacatcc agtaaatgtc t
//
