LOCUS       XM_039080315            6754 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus shisa like 1 (Shisal1), transcript
            variant X4, mRNA.
ACCESSION   XM_039080315
VERSION     XM_039080315.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080315.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6754
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6754
                     /gene="Shisal1"
                     /note="shisa like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 33 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500913"
                     /db_xref="RGD:1566029"
     CDS             293..892
                     /gene="Shisal1"
                     /codon_start=1
                     /product="protein shisa-like-1 isoform X2"
                     /protein_id="XP_038936243.1"
                     /db_xref="GeneID:500913"
                     /db_xref="RGD:1566029"
                     /translation="MMTSCGQRSRNVLAVFSLLFPAVLSAHFRVCEPYTDHKGRYHFG
                     FHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGYMHNNYTALLGV
                     WIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGNPARAPRPGQ
                     PAPQPQPPPGALPQAPQAVHTLRGDTHSPPLMAFQSSSA"
ORIGIN      
        1 agagagagag agagagagag agagagaagc gcagcaggcc ggcgcggggc agcagagggc
       61 gcggcggctg agctgaacgc ggcgcgggac gcgcgtgggg cgcagcgggc ggagcgcgac
      121 cggagccccg gagccccacg cgcccgcagc ctggcggaca actgttgcgg cggcgcgcgt
      181 gggcagcccc gcgcccctgc aggcggctcc cgcgggcgcc ggctcccggc tgcatagcga
      241 ggagcgaccg gcgcgagcac gaggcagcgc cggacgggtc aatgccagcc ggatgatgac
      301 cagttgtggc cagcggtccc ggaacgtgct cgcggtattc tccctgttgt ttcctgcagt
      361 cctgtccgca catttccggg tctgtgagcc ttacacggac cacaaaggcc gctaccactt
      421 tggtttccac tgcccccggc tctcggacaa caaaaccttc gtcctttgct gtcaccataa
      481 caacacggtc ttcaaatact gctgcaacga gacggagttc caggcggtca tgcaggcaaa
      541 cctcacagcc ggccccgaag gctacatgca caacaactac actgcgcttc tgggagtgtg
      601 gatttacggc ttctttgtcc tcacactgct ggtcttggat ctactctatt attccgctat
      661 gaactacgat atttgcaagg tttacctgac gcggtggggg atccagggac ggtggatgaa
      721 acaggacccc cggcggtggg ggaaccctgc tcgagcccct cggccaggac agccagcccc
      781 acagccacag cctccccctg gtgccctgcc gcaagccccc caggccgtgc acacacttcg
      841 gggagacacg cacagcccac ccctgatggc cttccagagc tcatctgcct gagcctcctg
      901 accttcccgg gctgctggag atgcaaatag cacaagagtg gaaaaccctt ttgctgtgcc
      961 tcaggatgga ggaggctaga accagagcac ctggtgcagc ctccaagagc agcttcaacc
     1021 aagacaccag ggagagccgg ggcagtggcg tggtaacaaa agaggaaata ccacctgtgc
     1081 ccagaacccc cttccgtgaa cttctgagat taggagcaaa ctcagggtcc ggggacaggg
     1141 tgtaggaaag gggctctgag ccgcctgtct gcaagcaata gttctctttg gggctggtgg
     1201 cttctgagaa gagactcagt gtggactgag gtgaccaaca gtaaattgcc ctgactgatt
     1261 ccagccagag ggatttgggg ctgtgagctg taccatggtc caaacactga cgtttcccca
     1321 cctccactcc ctccaatagc ggccccctta ggcctatccg tgtcgggata tcgaacttga
     1381 gtgtgtgcga gcacatgtgt gtgatcaggg tgtttctata tgttcagtca gttagctttt
     1441 aattgagccc catggccact gcaggctctc cgatgagtgc aagttgccgt gtggctcagg
     1501 agtcttgccc atgtccttgt ctgtggctca ggcctcttgc ttgggccagc aactgcgagc
     1561 tggtggagtc cgggcggcaa agggcccagc cttcctgtgt cacaggcagt ggggactgga
     1621 gcataccagt gacggtcggt tctggcggga tctattccca tagcagcagt aacgagaaag
     1681 catcttaacc ggctttgggc agcctaggtg ggatgtgtgg tgtgtacatc acagcccctg
     1741 ggaggtgagg gtgctaatgt cattgaaaac agtgcagctt gggggaaggg gtgccacact
     1801 tatatggcag gaagtggtca gctccataac ttggccccag gatgacagga acctgagact
     1861 acgtccttgg gttcccaggg tgtattaggc tccataaccc gggtgcccca gggtggtcac
     1921 tagagcacgt gtccaacatt ttcacagcac ctccagccca gctcctcccc cgcctcaccc
     1981 ccgagctcgc actagccaca tgcctgctgt gcaccgggcc aggcagagag gtccagaggt
     2041 gagtggaggc tgggctttgc cctggggtgc cacatctgga agggaagaaa ccatgtggct
     2101 agagtgatgg gtccaatggg aacccagagc agaggattct gtgaagctgt ccgcttacaa
     2161 tggggctttc tgagtaagcc tgggagccca aagagctctg cgtctctgcc ctggggcata
     2221 caaaaggaag gacatcccct cccccagaag tgaccctgta aatctccaga ggtcacattg
     2281 ccaatgtaga catggccatc tccccctacg aaagaggcca aactgttcct gccctcagcc
     2341 ctgtgatcca ttcttcctga agctgcatcc ctcccttggc cagcgctgtc cccaggcaga
     2401 acgtctgcag gggaaaggat cctggggctc gtaagatgaa gactgtgtta gcacacgagc
     2461 aaagtgatca caggccctcc tgcctcagtt tccccagtgc tgagaggaag gagtcatacc
     2521 agatgtcgag gcaacttctg gttttgggtg gctctgggtg acactctcac agctgcttgc
     2581 aaagggcttg gagctacttc ctctgtgaag cctcctccct cagacacagg aagggccatg
     2641 gctatgcaga tagcagggta ctatgtgggg gtggaggtcc ccatcagaag cctctaaggg
     2701 aatagctgaa gggccccatg aggcttctga ttgggatctg ctgggatgca cctctcatgt
     2761 atgtgtctga ggctaagaat ctaaacactg tccgggacac aggagaacgc ccgtccccag
     2821 aggacaacat aacctttgac ttagcaggcc ctgagcaccc tgctccctcc cagctggttg
     2881 accctggctc acccaccacc caacctctct gagcctcctc tcttcccttg gcaaacaggg
     2941 gttagaggtc agggtctttc ccagtgctga ctccagagct actagaagca agagctgtgt
     3001 ccatgtgggt gtgagcactc gggtgggctg gaggacccca ggtggccatc atgaaaatct
     3061 gtcccctgcc cgtggtttct gtgggtgaca gatgtgccaa ttagtagcat gtcctaaaag
     3121 gacacagagt agagacaaag tcctgaacag ttgttgcgct gtctctgccg agcttcccac
     3181 tgctgtctcc tccagctgca actgtcctct ttccatgagc ctcaggcgac agtacatgcc
     3241 tgcagccaca agtagccaca ggaagcagag aagctgcaga cacggggtgc ccacagaggg
     3301 tcacggaatg tctttgtgtc tgtctggctt tgtcccagtg ggtacccgat gtccctagtg
     3361 atcagtgtta cacctgtcat ctgtgtgctc tagaacctcc attcagaact cctccctccc
     3421 tggttggctg cacccaccaa ggaaatggct tactcatccc gtgtgggagt ggccaagcat
     3481 ctgatggtga ctgtaaccag tatgcaacag gccttaatcc aaacaggagc acacacacat
     3541 acacacacaa acatgcatat ccaggaacac acacatgtgt gcacacacac acacacacac
     3601 aaacatgcat atctaggaac acacacatgt gtgcacacac acatatacat acacccacac
     3661 atgtgaacat acttgttcat gtgtccacac atgcagatgc acacacacac agtatataca
     3721 tatgcacata ttcgtgtgtg cacgtctata cacacaccta tgagtgtcac ttacatgtgt
     3781 tcagtaatga acacctttga acatacacat gtatacatga caacagaaat agtcacccat
     3841 gtatgcatac acacccatgg ataccacatg cacgtgttca aacatgtata tacacacaca
     3901 cacacttaca tgcacacaca catgaactca cacatacatg ctccacaaga ggctgtaaga
     3961 agatccttgg gcttccagac actttcttag tggcttgttt taactttcca atctggctgc
     4021 ttgtccccac taacaggaat tgcttgagag gtaagcatga gagtccccag gcatttgggc
     4081 acaggtgaca acccgagtgg cctcctgagc atttcctgtg tgtgtgaagg gcatggagcc
     4141 agcacaccgt ttaccgtctg ctggggcagt gccccgaggc tgtcacacag ctcactgtgt
     4201 gtgcgcgcac gtgtatgtct atgtctgcct ggtcagagga cggagaagag gtgatgtcct
     4261 ggggcaaagg tgttctgtac cctctagagg gtgaggcttc gtgcctacca tgtgtcaggt
     4321 accaccatgg cttcctgccc tttccacagc cgcacaatgt gcctgcactt tatggctgtg
     4381 gttggaatga ctgacagctg aggccatcag cacagggcca cataccatcc ccatgctgct
     4441 caaatcctct tctgttcagc agacacttgc tgagcagccc cggacacccc tgctgtgtca
     4501 ttggcgcccc cctgaaaccg ctcctgtgca gacacaggtg ctgcatcaga aaacaggcag
     4561 tggtccccta acaggccggt ggtctaccat tgctgacctg actctgtgcc taacagaaaa
     4621 cttccactcc ccaaaataaa gacagaacat ttctctgttc ctcccacaaa agtgaccttg
     4681 gaggtggtgt tgcctgcccc actccaccct gttcccagtc cagactccag ccaggtagtc
     4741 ggtgctagaa atgtttgatg agtgaatgga tttaaccaca cgtcagtcac tcggtggtta
     4801 acactcctat ctttacgtca aagccctaac ctgtttaccc ttgacacatt agaaccgccc
     4861 tctaaaacat acagagtccc cttgcagtta gtgtcaactg taaagtaagc atggggccag
     4921 cagctagaga cacagggcca ccatggcctc ccatctggtt acggctagta tctgactagt
     4981 gtgagctttt aggcctgcgt ctcagtttct cacatccagt ctcttcccat tacccccgcc
     5041 gtctgtgctc aagctaccgg gaaatgcccc ttttaatatc cacaggtgag catatgggcg
     5101 aagtgcaata ccagcaaagc tggagggcca gagcccggcc accctcgaga gcaagaggcc
     5161 ttcctgcaag tgacttgctc tctccgccct gggtcagtgg accaaaggaa gcagacagga
     5221 cggagcggga aggtatctct aagctagaaa tgccaggctc gtgaagagca ggcacgggca
     5281 tctctctcag agcccatgac caggaaaacc aaaaagaaaa taaaaactgg tatcactatt
     5341 ctcccccttc ctagtccgat gtaataatgg cgtgtgttac actggcgctg tcttgctgcg
     5401 tttgtctttc tatatagtgg tttttataac gacttcctta gttttaataa aggagaaatc
     5461 aaatcaactg tttccccctg ttgaagctgg attggatgtt caacacagac gctgggaacc
     5521 caggcagtgt aacttgttgc cgtgggtcga ggagggagag gaccaggggc tgggggctca
     5581 gccacggggt ggtggtccat cgtgaagaac tcaaggtttt ttcaaggtca agggcagaaa
     5641 acaaggccag acagacactg tcctgagtgg gtgaaggcta agttgtgtgc acaggggagt
     5701 gacagccgga tatggcttgg gagcctgggt gtggctgtcc tgaagtcctt ctgggaacag
     5761 ttgagctcag gagaagacaa tgggtcttct ctgccacagt ccccagggcc agggcacggg
     5821 cctcacacag gaacacatcc tcatccacct acaccagctc tccctcaggt gaacacaata
     5881 tgttccttgt gtgttagatg agaagacaga gtagccttca ttagtaagca ctggtttcct
     5941 gaaaagccat tgtcctttcc tttggtccct cacatagaag acaccagaca ctcttggcct
     6001 tggaagcctc aggccccaga aaagcagctg agtgacatgg ggaatggaca gtaggctggg
     6061 tgcaggctga gggtaggaga gacttcacag gtttattctc tggggcatct agtgggtctt
     6121 gaacttggaa agacggccag gactggtctc ctggtagccg aatggtaacc gtggatacta
     6181 gagacatgct ggctttcctc atggttcttg agttctagga caggctggat gcttttctga
     6241 ggaggaggat ggcagaccag gtcctcaaga gaggtaccca caggcagaga ccagaccaag
     6301 agactgttag gaccatcctt cctaatccac ataggcgtca gccacctgga tcacaccatc
     6361 aggtcctggc tatcggggta ccttgcccct ctatttcctc tcctccctct gttggaagat
     6421 ttcttcatct tctctattgg accatgatta ttagtgttca tcaaggagac aggaacacac
     6481 cagccagcac tgcctgggtc actcaggcac accctctacc ccagagaaca tttggtcctc
     6541 agggttccaa gtacaggaga tgatggagga gacaacacag gatgggccca ggctgccagg
     6601 catccaacta gggaacagga tagttatgga ccccaaaggc tgttccccag gaattaacat
     6661 gcccaagccc tcacagacca gccccagttt cccaaacctg agtcaattgc ttctgggtga
     6721 caacagcaac agatttcaat aaatgggatt aaac
//
