LOCUS       XM_008767465            5939 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus shisa family member 9 (Shisa9),
            transcript variant X1, mRNA.
ACCESSION   XM_008767465
VERSION     XM_008767465.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008767465.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5939
                     /gene="Shisa9"
                     /note="shisa family member 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 38 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100361134"
                     /db_xref="RGD:2320726"
     CDS             1425..2822
                     /gene="Shisa9"
                     /codon_start=1
                     /product="protein shisa-9 isoform X1"
                     /protein_id="XP_008765687.2"
                     /db_xref="GeneID:100361134"
                     /db_xref="RGD:2320726"
                     /translation="MCGQRRPAAPASSLGSFGRASRGGGIGSSGGRALQPGLGDTMRR
                     VLRLLLGCFLTELCARMCRAQERAGHGQLAQLGGVLLLTGSNRSGAASGEAGEGVGGS
                     DAPPTRAPTPDSCRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQST
                     CTNYDTPLWLNTGKPPARKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEK
                     AHRPQREHMSRALADVMRPQGHCNTDHMERDLNIVVHVQHYENMDTRTPINNLHTTQM
                     NNAVPTSPLLQQMGHPHSYPNLGQISNPYEQQPPGKELNKYASLKAVGNADGDWAVAT
                     LKSPKADKVNDDFYTKRRHLAELAAKGNLPLHPVRVEDEPRAFSPEHGPAQQNGQKSR
                     TNKMPPHPLAYNSTANFKTWDPSDQSLRRQAYGNKGKLGIAESGSCDPLGTRTQHFPP
                     TQPYFITNSKTEVTV"
ORIGIN      
        1 gggtctattg aaataaaatt caagcagggg ataggaagaa gtaggagaaa tggttgaggg
       61 cttatgtccg gctgggagga atcagccagg agaaagggag agtgagtaga tttggaaagg
      121 ctgagaagag atgctgagag ccaaggaagc aagctcggtg aggatgtcgg gaaagggggc
      181 tctgtggaga cagtggacag cctgctctgg agactgtagc gcgggctgca ggaaagacat
      241 agtggctgag gatgaatgcc caggccttgc gctgcgccaa gactgccagc gcagaggcgg
      301 cgccgctgtg tgccctcctg tggagctcag cgaacgctgc gggggcgagg agggacagaa
      361 agctgcaggt cctaagggct aggcgacttc ttaggagagc ccttccagga tgagccattg
      421 ccttcgcttt gtccgctggc cgcctcccca gacctcctag attttaaaat gagttcccaa
      481 gcccctattc tgggatgctt accacagtcc aaggggcttg acacttaacc caccttccca
      541 gttccagcct cttctctgcc cagggacttg aaccatccca ggctcgcgcc aggcaggagg
      601 tcgcatcccc ggaaagggca aggcagtacc tgcacgccca gagggaggag ggagatcttg
      661 tctacactgc ttctagtgtg tcttggagtg agcaagccat ctaatctgtc ccgattctcc
      721 tagagtcacc tcttccctga tcgacagatt gcaaccgcag cttctgcgca cgcaccccta
      781 ggggtaaaac accgcgggcg gagccacctc tgagcctttg cttagggtga ggcgcacctt
      841 tctcccgaga gggtgccaga ggtcccagcc gcggttcttt ccacctgccg agaaaccaga
      901 gctgttcttc cgagcctggc ggcggcggag cttgctgctt ctgccccagc gctctctgca
      961 cgccccccta ctcgcccccg cccgcccgag tcacctcttt ccgcgccccc gccccttgcg
     1021 agctagcgct cgcccccccc ccccgtcctc ctccccttcc cccttccctc tggccctccc
     1081 ttcattccac aagtgtcgct tctctctctc cagcgcactt ggcgtgcaag agaggtgaag
     1141 agcatcctgc gagcgagcgg acgtggggat ccgagtcccg ggcggcggac ggaggggagt
     1201 tacggacaca gcgactctcc cctgctttcc gcccccgcct cccccggtgg cccgcaggac
     1261 ctgcaccccg cgctggcccc cgctcctgct ccgtccccgc ccggccccgg cgcgctcctc
     1321 cccggccggc ccccttcctc ggcgcgcgtc gcgctggagg cgaacgcagt ctgagccgag
     1381 cgcagtggcc gccgaccacc gagcgccccg cgccgcctcc ctgcatgtgc ggccagcggc
     1441 ggcccgcagc ccctgccagc agccttggca gcttcggccg cgcgtccaga ggcggtggca
     1501 tcggctccag cggcggccga gcgctccagc ccgggctcgg agacacgatg cgccgagtcc
     1561 tccggctgct cctcggctgc ttcctcaccg agctgtgtgc ccgcatgtgc cgggcgcagg
     1621 agcgagctgg gcacgggcag ctggcgcaac tgggcggcgt gctgctgctc acagggagca
     1681 atcgctcggg ggccgcctcc ggagaggccg gcgagggcgt cgggggctcg gacgcaccgc
     1741 cgactcgagc gcccacgccg gactcctgtc gggggtactt cgatgtcatg ggccagtggg
     1801 acccgccgtt caactgcagc tcgggcgact tcatcttctg ctgcgggact tgtggcttcc
     1861 ggttctgctg cacgtttaag aagcggcgac tgaaccagag cacctgtacc aactacgaca
     1921 cgccactctg gcttaacacg ggcaagcccc cagcgcgtaa ggatgacccc ttgcacgacc
     1981 ctaccaagga caagaccaac cttatcgtct acatcatctg cggggtggtg gctgtcatgg
     2041 tgctggtggg catcttcacc aagctggggc tggagaaagc acaccggccc caaagggaac
     2101 atatgtccag agcccttgcg gatgtcatga ggccacaggg ccactgcaac actgaccaca
     2161 tggagagaga ccttaacatt gtcgtccacg tgcagcatta tgagaacatg gacacaagaa
     2221 cccccataaa taatctccat accactcaga tgaacaatgc agtgcccact tctcctctgc
     2281 tccagcagat gggacaccca cattcatacc ccaacctggg ccagatttct aatccatatg
     2341 aacagcagcc tccaggcaaa gagctcaaca agtatgcctc cttaaaggca gtaggaaatg
     2401 ctgatggtga ctgggcagtg gcaacgctta agtcaccaaa agctgacaag gtcaatgatg
     2461 acttctacac caagagaagg cacctggcag agctagctgc caagggaaat ctccctttgc
     2521 acccggtaag agtggaagat gagcctcggg ccttcagccc agagcacggg cctgcccagc
     2581 agaatggaca gaagtctcgc accaacaaga tgcccccgca tcccctggcc tacaactcta
     2641 cagccaactt taagacctgg gaccccagtg accagtctct ccggcggcag gcttacggca
     2701 acaagggcaa gcttggcata gctgagtcag gctcttgcga cccgctgggg actcgcaccc
     2761 agcactttcc acccacacag ccatacttca tcactaacag caaaacagaa gtgactgtct
     2821 gagctttcac ttcagggagc accctggaga ccacactcaa ctgagagagg caaaaaatac
     2881 cattccacct acaccttcct ggtcctgtac acccccactc ccaaccccac ccccacccca
     2941 acccctcagc agacacacac actccgttct gcaggaacca accacagacc tactcgtgat
     3001 aaggaatcat gtttttcctg ggtcatgcct aatacgctcc cgcaggcagc tgagcgagac
     3061 cgaagcatgg acattgagca atacagaggg ggaaacttta agcttcaggc ccaaattgtg
     3121 ggggctcatt ttccttctcc cccaacagaa aactgaaatc cattataaca gatgtataag
     3181 tagcacaatt tagacaaact gcccacggag cgcactgggt tccccggttc tgtctttcct
     3241 ggtagaagga agagggtagg tacacagaga ggagtggctc agagtgtccg gaaggaattt
     3301 gctcatgtca caagcatttc ctagtccaaa gaagtgatgc aaatgcagaa tagtgaggag
     3361 tgtgaggctg taatggactc tcatggaaca ttgcataccg tcgaaactga atgcaaaaat
     3421 ctcacaaagt aagtctgctc taagcccacc gccaatgatg ggaaagggaa ggacattcta
     3481 aagaactccc tgaaagacca tgatgttgac agtgatgggc ttttatgata gccagagggt
     3541 ccagagaata ataaagaacg aacttttaaa gtgacatgtt aaatgaacac acaaaatatt
     3601 aactttttct ggggcttaaa gaacctgcag ttggagagta acagcaggtg agatggacac
     3661 cgaggagcct tcacttcccg ggtcgtctct aagaactgca acaaagacaa aaaatgtcct
     3721 ttatgacctg tctgtcccca ccaccctttc cctttcagcg tgctgctgcc actgctgcca
     3781 aacttcaact gctttggagt gaaaaatgtc ataagcgtgg gtggtgcctt cagtgtgttg
     3841 ctgttgttta agtgatggtc tcgtttccca agaacatcct ctgttccttt acccttcccg
     3901 cctcccgttt ctcctgcagt agtgatgttc tgtctctcct ctgtaggtga gcccaaccaa
     3961 ttaacaccct ttgaaggagc tgctacaatg tcagaggtac ctaagaacag cccaactccc
     4021 tccctcccgc cagattacct ccagggccac ttcatgccat cctttcttac ctggactctc
     4081 ccaaggttgc tttcagattg gttccaacag ccaacagtta ttgggtccca gcaaggaagg
     4141 tcctcctaaa agtccttcat ttggtggaag cacaggcagg tgcgtggaga ggcaagagag
     4201 ttttgtttag agagaaaagt ctgcaactgt tccccgaagc tcttagctaa ttaacaagca
     4261 tcttctaaaa tctcacagct tctttggtgt aaaaatctag tgaaatagaa ttggagcatt
     4321 ccatgggatg ctctgctgcc cgggctctct ggcatcacag cagcatcagc acagcagata
     4381 gtttccatgt tccaagcaag cagaaaggac ctggcaatat ctttgatctc tctggggctg
     4441 tctcccatct gaagcatggg gagtctggcc taagttaagc cttttcggtg ttttaaaaac
     4501 agcactctgt tcttatttac agaagagagt ctgcaaagat caaactctat aagattccca
     4561 aataagaaga ggtgcagaga agggcaacac aaaggtcaga ggtcagagaa atgttgagac
     4621 cccagcactc tccacagtgg agtatgactt tgcacatctc tctttgacat gagttagtta
     4681 caccctcgcc acgcacactg ggggattatc atcacagtat tggtatctta ctgcatttgc
     4741 ttttaaacta ggtcattttg aaagagaagc atcccgtctt tatcacatat agaacactag
     4801 catccatcac catgtacaga cagtaaacat ggaaaacatt ggcctcgaag acaaaactct
     4861 agtgaaggtc tggcctgttc tcttctcttt caaaaagaca ttaatgcagt taaagatact
     4921 ggtacccaat agagagctcg tccttaagag taattcagtg aaggggaatg caggtgaaaa
     4981 gaaactcctc tttagaattg gtgttaaatt gtgccctgta tccatatact acctccctga
     5041 catacagttt gcatgtacta gtgacataca gtcctacttc aagaaacact agggtgactt
     5101 atctgagagg ttctttccag gtcaagttct gcaatccatt ccttccttct agctcatttt
     5161 tccctctcga ctcccttcac ctccccttta tccaactcta agttaaagaa ggtctttctt
     5221 gacccacagt ctatattagt ctatttctta ctcacccttc ttgttgacgt agacttcatc
     5281 caagtagact cggctccctg gtctgcagtt gtaattttga cttccaagac acagtctggc
     5341 cactagcatg tagcatatac ttcccacatg atgcggtcac agacagctct catactgctt
     5401 gcctcattgc tttctgtttg actttggaag atgaactgag aagggacaat cagcagggaa
     5461 tatctgttta ttctttgcct tcctcttggg aaggcaggta actcttatga cactgaaaga
     5521 gagcatgatc tgtacaataa ttgaagacaa tgagtaagat tatacaactg ttttcttctc
     5581 cttccatcag acccccagtt tctaactcta tgggaccaga tcatggcttc cctcaccttc
     5641 ctggagtctc agcctccacc tgccttgggc tctgcctgga attcccatct aactcctccc
     5701 cccagttttt tttttggtgt aaatggagca tattttatgt gcaaatattt tagtaaccat
     5761 atgttctgca agtaaacccg tgttaacact tgtcacactg cagagtttat gatacaataa
     5821 cacttcctac aatgaagaaa aaaacatttg tttgttttct aagaatgttt atttgtaaac
     5881 atatgtattc actatattaa tatgaatttc ttacctggca ataaactgat tatatgtga
//
