LOCUS       NM_001207022            1897 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus shisa family member 8 (Shisa8), mRNA.
ACCESSION   NM_001207022 XM_001077526 XM_235511
VERSION     NM_001207022.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000007.1.
            
            On or before May 18, 2011 this sequence version replaced
            XM_235511.4, XM_001077526.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.42397.1,
                                           SRR26643298.41339.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1024              JAXUCZ010000007.1  115606930-115607953 c
            1025-1158           JAXUCZ010000007.1  115603996-115604129 c
            1159-1305           JAXUCZ010000007.1  115603307-115603453 c
            1306-1897           JAXUCZ010000007.1  115602503-115603094 c
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1897
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /note="shisa family member 8"
                     /db_xref="GeneID:315163"
                     /db_xref="RGD:1563996"
     exon            1..1024
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /inference="alignment:Splign:2.1.0"
     CDS             501..1700
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /note="putative protein shisa-8; shisa homolog 8"
                     /codon_start=1
                     /product="protein shisa-8 precursor"
                     /protein_id="NP_001193951.1"
                     /db_xref="GeneID:315163"
                     /db_xref="RGD:1563996"
                     /translation="MERAGARGQRCGRRPHGLPLALRLALLLAGSPSGRAGAPEAQET
                     AASGTVAPAGGDRCRGYYDVMGQWDPPFNCSSGVYSFCCGTCGYRFCCHDGPRRLDQS
                     RCSNYDTPAWVQTGRPPARARDTAAPRDPARERSHTAVYAVCGVAALLVLVGIGARLG
                     LERAHSPRARRTVTRTLTELLKQPSPQEPLPPPLGPSLGNCVQVQMGDGVLRGSPHNS
                     TDKKRLNNAPLGSATPGPPRGPRPQGGGSLTLQPDYAKFATLKAAALKATEAAPQDFY
                     QRFPSTESGPRTLPARVPRPPEDLPALLDACPWAPPGYVPPAGPVSSVPYAAWTAGRP
                     ARPLPRSHLVAQVSPAPRRPSHAPRRQFSVEKLPEAFSAQPTSFYSSAGRGPRHLSTN
                     SKAEVTV"
     exon            1025..1158
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1305
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1897
                     /gene="Shisa8"
                     /gene_synonym="RGD1563996"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggccgcgct cctcccccag ttctgcctcc ctcccgccct cctcccctcg ctccctctcc
       61 cgcccgccca agcccgcgcc gagcccgcgc cggagccaga gccggagcca gagcgcgggc
      121 accgcggagc gggcggcggg aaggcagagg tgtccggcga cccgccgccc ggctcagtcc
      181 ccgaaagacc caggacccgc acgtccgccg gggccaaagg gacccgggga ctgtgcagac
      241 gagcacctgc ctcccgcctt cacggtgcac agtccgaggt gagccccgga ggagaacgcg
      301 cccaccggag atccagcccc gcgaactcca cacggagctc acttgtgtct ggaactgcgg
      361 acgcaccagg aggcgtcggc ccggagccag cgcgggcagc tgggcgacca ggcgacaggt
      421 ctcggagggc tgggggagcc tggcagagcg gccacgcgcc gagccatgag cggggcgcaa
      481 taacaggagg agcgggccgc atggagcgcg ctggggcgcg gggacagcgt tgtggccggc
      541 gcccgcatgg gctcccgctc gcgctccggc tggcgctgct gctggcgggg tcgccgtcgg
      601 gccgcgcggg ggctcccgag gcgcaggaga ccgcagcgtc cggcaccgtg gcaccggcgg
      661 gaggggaccg ctgccgcggc tattacgacg tgatgggcca gtgggacccg cccttcaact
      721 gcagctccgg tgtctacagc ttctgctgcg gcacgtgcgg ctaccgcttc tgttgccacg
      781 acggcccgcg ccgcctggac cagagccgct gctccaacta cgacacaccg gcctgggtgc
      841 agactggccg cccgcccgcc cgcgcccgtg acaccgccgc tccgcgcgac ccggcccgcg
      901 agcgcagcca cactgcggtc tacgcggtgt gcggtgtcgc cgcactgctc gtgctggtcg
      961 gcatcggggc acgcctgggt ctggagagag cgcacagccc ccgcgctcgc cgcacggtga
     1021 ccaggacact gacagaactt ctcaagcagc caagccccca agaaccactg cctccacctc
     1081 tgggtccatc cttgggtaac tgcgtccagg tacaaatggg tgacggtgtt ctccggggtt
     1141 ctccccacaa cagcacagac aagaaacgtc tcaataatgc gcctctgggg tccgccaccc
     1201 caggaccccc gcgcggtccg cggccgcagg gtggtggcag cctgacgttg cagcctgact
     1261 atgccaagtt tgctactctc aaagcagctg cgctcaaggc cacagaggct gcgccccagg
     1321 acttctatca acgttttccc tctaccgagt cgggcccgcg gactctccct gcgcgggtcc
     1381 cgcggcctcc agaggacttg cctgcgctgc tcgacgcctg tccctgggcc cctccgggtt
     1441 atgtacctcc cgccggccct gtctcgtccg tcccttatgc ggcctggacc gcaggccgcc
     1501 ccgcgagacc gctcccccgt agccacttgg tggctcaggt ttctccagcg ccccggcggc
     1561 ccagccacgc gccgcggcgt cagttcagcg tggagaagct gcccgaggcc ttcagcgcgc
     1621 agcccacgag cttttacagc agcgcgggca gaggaccccg gcatctaagc accaacagca
     1681 aagctgaggt tactgtttaa agcggaacca ttggagcctt ctgcacggtc ctgggaccca
     1741 ggtcgtggag ttgcagtgca ggtctcaatc caaacaggaa tgagggcatt tggagcctgt
     1801 ggctaaaggg tcaaaagggc caggtgttct gttcttggga atgtagggct atccttactt
     1861 gtgtaaataa accctctaat gtggttcccg tcccaaa
//
