LOCUS       NM_001395737            1783 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus shisa family member 5 (Shisa5), transcript
            variant 2, mRNA.
ACCESSION   NM_001395737 XM_006243761
VERSION     NM_001395737.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ludes-Meyers,J.H., Kil,H., Bednarek,A.K., Drake,J., Bedford,M.T.
            and Aldaz,C.M.
  TITLE     WWOX binds the specific proline-rich ligand PPXY: identification of
            candidate interacting proteins
  JOURNAL   Oncogene 23 (29), 5049-5055 (2004)
   PUBMED   15064722
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
REFERENCE   3  (bases 1 to 1783)
  AUTHORS   Bourdon,J.C., Renzing,J., Robertson,P.L., Fernandes,K.N. and
            Lane,D.P.
  TITLE     Scotin, a novel p53-inducible proapoptotic protein located in the
            ER and the nuclear membrane
  JOURNAL   J Cell Biol 158 (2), 235-246 (2002)
   PUBMED   12135983
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 3, 2021 this sequence version replaced XM_006243761.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ231597.1, SRR22582419.2025459.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-175               JAXUCZ010000008.1  118569975-118570149
            176-332             JAXUCZ010000008.1  118572185-118572341
            333-416             JAXUCZ010000008.1  118578799-118578882
            417-532             JAXUCZ010000008.1  118583191-118583306
            533-745             JAXUCZ010000008.1  118583485-118583697
            746-1783            JAXUCZ010000008.1  118583843-118584880
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..1783
                     /gene="Shisa5"
                     /note="shisa family member 5"
                     /db_xref="GeneID:301013"
                     /db_xref="RGD:1359661"
     exon            1..175
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..804
                     /gene="Shisa5"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; protein shisa-5; scotin; shisa homolog 5"
                     /codon_start=1
                     /product="protein shisa-5 isoform 2 precursor"
                     /protein_id="NP_001382666.1"
                     /db_xref="GeneID:301013"
                     /db_xref="RGD:1359661"
                     /translation="MRLFVRPSVRPAMAAPAPSPWTLSLLLLLLLPSPGAHGELCRPF
                     GEDNSIPESCPDFCCGSCSSQYCCSDVLKKIQWNEEMCPEPESRFSAHPETPEQLGSA
                     LKYQSSLDSDNMPGFGATVAIGLTVFVVFIATIIVCFTCSCCCLYKMCCRPRPVVSNT
                     TTTTVVHTAYPQPQPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQSTGPP
                     AYHETLAGASQPPYNPAYMDPPKAVP"
     exon            176..332
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
     exon            333..416
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
     exon            417..532
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
     exon            533..745
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
     exon            746..1783
                     /gene="Shisa5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaggctaga gccgcgctgg tcgcggaggt tgtggctgca ccgtggtcct gggcttggtc
       61 ctgggcttga tgcgtctgtt tgtccgtccg tccgtccgtc ccgccatggc tgcgccggcg
      121 ccctctccgt ggaccctttc gctgctgctg ttgttgctac tgccgtctcc gggtgcccat
      181 ggcgagctgt gcaggccctt cggtgaagac aattcgatcc cagagtcctg tcctgacttc
      241 tgttgtggct cctgttccag ccaatactgc tgctctgacg tgctgaagaa aatccagtgg
      301 aatgaggaaa tgtgccctga gccagagtcc agattttccg cccacccgga gacaccagaa
      361 cagctgggtt cagcgctgaa gtatcagtcc agtcttgaca gtgacaacat gccagggttc
      421 ggagcgaccg tggccatcgg cctgaccgtc ttcgtggtgt ttatcgctac catcattgtg
      481 tgctttacct gctcctgctg ctgtctatat aagatgtgct gccgcccacg acctgtcgtg
      541 tccaacacca caactactac cgtggttcac accgcttacc ctcagcctca acctgtggcc
      601 cccagctatc ctggaccaac ataccagggc taccatccca tgccccccca gccaggaatg
      661 ccagcagcac cctacccaac gcagtaccct ccaccctacc tggcccagtc cacagggcca
      721 ccagcctatc atgagacgtt ggctggagcc agccagcctc catacaaccc ggcctacatg
      781 gatcccccaa aggcagttcc ctgagcctgc ccccagcctc tttggctaac atttgattat
      841 gtcatgtgtg tgtgagtgct atgcagagtt ctttactgct gtctgtggtg cgtgtgcctt
      901 gtctagacat gtggcttcct ctgctgatga ccaggtaggc acaaatctta ccagtgctgg
      961 ttgggaccaa tctgttttct tcctcacttg aaattgtaat ttctgaaatt tcaagtaaat
     1021 taaaaacaat agggtaggag gtatttcccg cttcacccca aggtgaccag ccatagcctg
     1081 ccacacatag gagagcaagc tttttgtggg tccatgtcct gctttgggga gtagccagct
     1141 agctgctgct atgggtttat tcccagggct tggctgcatt tagctggaca gagaacaagg
     1201 ggcctcagtg gcagtgggtc agtgactgat gtcagagcac actaggcaga gagccccgtc
     1261 cgtctccatc agctgtctgt ctggacggtc ccactgtctt tcctgggact atgtagaggg
     1321 ccacatgtat tcactattca ggctccagtg gcttccaggc caggggcctc tgtctactac
     1381 acactctggt ttctccctac agtgtctttt tacgattagc caaacatatt gcctgttttt
     1441 tgtatccaga tgtgtgataa ttggtgaggt tgaaatcctt ggttcctgga gaacaggaaa
     1501 cctgacctct gacagtccat ttcccttgac accagcttca tagaatacct gactcctgta
     1561 ctacagtcca gtttgttcca gtagcaggga caccagggcc aggggttatc tggaccaagg
     1621 gtgggggtgg agagcctgga tggtagctct ggaccagatg tgaatgcctc catattccct
     1681 gttggttcct gtttcactgg ctgttttagt tttgtgttaa ttggtgtttc tgagcattca
     1741 aactccgcac cctcgtttat aataaatgaa tatttggacc act
//
