LOCUS       NM_001077826            1459 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus shisa family member 4 (Shisa4), mRNA.
ACCESSION   NM_001077826 XM_001062943 XM_341125
VERSION     NM_001077826.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Nielsen,J.A., Maric,D., Lau,P., Barker,J.L. and Hudson,L.D.
  TITLE     Identification of a novel oligodendrocyte cell adhesion protein
            using gene expression profiling
  JOURNAL   J Neurosci 26 (39), 9881-9891 (2006)
   PUBMED   17005852
  REMARK    GeneRIF: At the O4+ oligodendrocyte differentiation stage, a new
            proline-rich transmembrane protein, Prmp, is expressed. At the
            plasma membrane, Prmp displays adhesive properties that may link
            the extracellular matrix to the actin cytoskeleton.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Oct 18, 2022 this sequence version replaced NM_001077826.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158557.1, FQ214216.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840106,
                                           SAMN12840107 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JAXUCZ010000013.1  49355414-49355599   c
            187-358             JAXUCZ010000013.1  49354901-49355072   c
            359-492             JAXUCZ010000013.1  49353691-49353824   c
            493-660             JAXUCZ010000013.1  49352544-49352711   c
            661-1459            JAXUCZ010000013.1  49351518-49352316   c
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..1459
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /note="shisa family member 4"
                     /db_xref="GeneID:360848"
                     /db_xref="RGD:1312041"
     exon            1..186
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..707
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /note="transmembrane protein 58; proline rich membrane
                     protein; protein shisa-4; shisa homolog 4"
                     /codon_start=1
                     /product="protein shisa-4 precursor"
                     /protein_id="NP_001071294.1"
                     /db_xref="GeneID:360848"
                     /db_xref="RGD:1312041"
                     /translation="MPPAGPRGVAPLAAVVLLVLGAPLALASEDCLWYLDRNGSWHPG
                     FDCEFFTFCCGTCYQRYCCRDLTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVAT
                     TICCFLCSCCYLYRRRQQLQSTFEGQEIPMTGIPMQPVYQYPPDPKAGPGPPQPGFMY
                     PPSGPAPQYPLYPAGPPIYNPAAPPPYMPPQPSYPGA"
     exon            187..358
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /inference="alignment:Splign:2.1.0"
     exon            359..492
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /inference="alignment:Splign:2.1.0"
     exon            493..660
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /inference="alignment:Splign:2.1.0"
     exon            661..1459
                     /gene="Shisa4"
                     /gene_synonym="Prmp; RGD1312041; Tmem58"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagcctggc ggagggctgg gcggtgctgc agctcccgcc ggccggcttc gtccagcttt
       61 gtcctgcggc cccttttcaa ggccgtcctg gccgcgccca gccccctccg gccatgccgc
      121 ccgccgggcc ccgcggggtc gcgccactcg ctgccgtcgt cctgctggtg cttggggctc
      181 ctctggcact ggcgagtgaa gactgcttgt ggtatctgga ccggaatggc tcctggcatc
      241 cgggatttga ctgcgagttt ttcaccttct gctgcgggac ctgctaccag cggtactgct
      301 gcagggacct gaccttactc atcaccgaga gacagcagaa acactgcctg gccttcagtc
      361 ccaagaccat agcaggcatc gcctctgctg taatcctctt tgttgccgtg gttgccacca
      421 ccatctgctg cttcctctgt tcctgttgtt acctataccg aaggcgccag cagctccaga
      481 gcacatttga aggccaagag attccgatga caggcatccc aatgcagcca gtataccagt
      541 accccccgga ccccaaagct ggacctggac ccccacagcc tggtttcatg tacccaccta
      601 gtggtcctgc tcctcagtat cctctctatc cagctgggcc cccaatctac aaccctgcag
      661 ctcctccacc ctatatgcca ccacagccct cttacccagg agcctgaaga aacagctgtg
      721 gctctgctgt cccttccatg acgccgtttt gttgggagag tccccatcct gtacctgcat
      781 ctagccctga gggtgggcat gggtcttctg gtcaccaggc cccaggtcaa gccaagcctt
      841 gggccctgct gaggacagag cccagagaag tggaacgtga gctgagctgg aaccaggccg
      901 tggatgaggg gtgggtaggg agggcttggg attcatgagc tattttcact gggagtaaga
      961 tgagagcctg ggtcacagtc tctgttttca agtagtccct cctcccagga tcccaatcag
     1021 aaaggtgggg cccctcctat ttgcccagtt tgggcagagg tggagaccgg tggggggggt
     1081 gggctctatc aacagctggc cacagccctt ccctctggct gcccgactgg ccagagctca
     1141 ggcctcctgg attaaagctg taacgatatc actcgtcagt ggaatcattg gccccttctc
     1201 ctatccctgc cttctgctga acccagactg ctgcccgccg ctccacattc cacggcaggg
     1261 gagggcagcg ccagtgggag aagagccctg ccatcagccc catcccgggg aaaacccctg
     1321 aggatccctg aactgttttc caatgctgtc ggggcagatt tgtggcagcc aaaaagaggg
     1381 tgctcatgtg cttctcaggg ccaggcctct gagacatcca aggcattacc agctatataa
     1441 aggcacctct ctattcgaa
//
