LOCUS       NM_001191936             959 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus shisa family member 2 (Shisa2), mRNA.
ACCESSION   NM_001191936 XM_573798
VERSION     NM_001191936.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Furushima,K., Yamamoto,A., Nagano,T., Shibata,M., Miyachi,H.,
            Abe,T., Ohshima,N., Kiyonari,H. and Aizawa,S.
  TITLE     Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings
  JOURNAL   Dev Biol 306 (2), 480-492 (2007)
   PUBMED   17481602
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Katoh,Y. and Katoh,M.
  TITLE     Comparative genomics on Shisa orthologs
  JOURNAL   Int J Mol Med 16 (1), 181-185 (2005)
   PUBMED   15942696
  REMARK    GeneRIF: Shisa gene at rat chromosome 15p12 was found to encode a
            type I transmembrane protein, showing 99.3, 92.5, 81.7, 40.3 and
            38.6% total-amino-acid identity with mouse Shisa, human SHISA,
            chicken shisa, Xenopus shisa and zebrafish shisa, respectively.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000015.1.
            
            On Jul 17, 2010 this sequence version replaced XM_573798.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.50899.1,
                                           SRR26643296.34438.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-334               JAXUCZ010000015.1  37982913-37983246
            335-959             JAXUCZ010000015.1  37986587-37987211
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..959
                     /gene="Shisa2"
                     /gene_synonym="RGD1561256; Tmem46"
                     /note="shisa family member 2"
                     /db_xref="GeneID:498528"
                     /db_xref="RGD:1561256"
     CDS             1..888
                     /gene="Shisa2"
                     /gene_synonym="RGD1561256; Tmem46"
                     /note="transmembrane protein 46; protein shisa-2 homolog;
                     shisa homolog 2"
                     /codon_start=1
                     /product="protein shisa-2 homolog precursor"
                     /protein_id="NP_001178865.1"
                     /db_xref="GeneID:498528"
                     /db_xref="RGD:1561256"
                     /translation="MWGGRCSPSTSSRHRASLLQLLLAALLAAGARASGEYCHGWLDA
                     QGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGVGEPGRT
                     DREGPDSSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQDPQQSRAPGGNRL
                     METIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGTMNNVYV
                     NMPTNFSVLNCQQATQIVPHQGQYLHTPYVGYAVQHDSVPMTPVPPFMDGLQPGYRPV
                     QPSFAHTNSEQKMFPAVTV"
     exon            1..334
                     /gene="Shisa2"
                     /gene_synonym="RGD1561256; Tmem46"
                     /inference="alignment:Splign:2.1.0"
     exon            335..959
                     /gene="Shisa2"
                     /gene_synonym="RGD1561256; Tmem46"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtggggcg gacgctgctc accttccacc tcttccaggc accgcgcgtc gctgctgcag
       61 ctgctgctgg ccgcgctgct ggcggcgggg gcgcgggcca gcggcgagta ctgccacggc
      121 tggctggacg cgcagggcgt ctggcgcatc ggcttccagt gccccgagcg cttcgacggc
      181 ggcgacgcca ccatctgctg cggcagctgc gcgctgcgct actgttgctc cagcgccgag
      241 gcgcgcctgg accagggcgg ctgtgacaac gaccgccagc agggcgtagg ggagcctggc
      301 aggacggacc gagaaggccc agacagctcc gcagtcccca tctacgtgcc gtttctcatc
      361 gttggctccg tgttcgttgc cttcatcatc ctcgggtccc tcgtagcagc gtgctgttgc
      421 cgatgtctac ggccaaagca ggatccccag cagagcagag ccccaggggg caaccgcctg
      481 atggagacca ttcccatgat tcccagtgcc agcacgtcac ggggctcatc ttctcgccag
      541 tccagcacgg ctgccagttc cagctccagt gcgaactccg gggcccgggc tccaccgacg
      601 aggtcacaga ccaattgctg cttgcccgag ggaaccatga acaatgtgta cgtcaacatg
      661 cccacaaatt tctctgtact caactgtcag caggccaccc agatcgtacc ccatcaaggg
      721 cagtacttgc atactcccta cgtgggctat gcggtacaac atgactctgt acccatgacg
      781 ccggtgcctc cgttcatgga tggcctgcag cctggctaca gaccagtgca gccctccttt
      841 gctcacacta acagtgagca gaagatgttc cctgcagtga ccgtatagcc tgcagctcac
      901 agattagact cctctatgag actgagcaac acagggcccg attcttgctc cagaagtcg
//
