LOCUS       XM_008765978            1709 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus shiftless antiviral inhibitor of
            ribosomal frameshifting (Shfl), transcript variant X3, mRNA.
ACCESSION   XM_008765978
VERSION     XM_008765978.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008765978.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008765978.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1709
                     /gene="Shfl"
                     /gene_synonym="RyDEN"
                     /note="shiftless antiviral inhibitor of ribosomal
                     frameshifting; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 80 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500956"
                     /db_xref="RGD:1565995"
     CDS             303..1106
                     /gene="Shfl"
                     /gene_synonym="RyDEN"
                     /codon_start=1
                     /product="shiftless antiviral inhibitor of ribosomal
                     frameshifting protein homolog isoform X3"
                     /protein_id="XP_008764200.1"
                     /db_xref="GeneID:500956"
                     /db_xref="RGD:1565995"
                     /translation="MAQDGVELEKSVRRLREKFHGKVSPKKAGALMRKFGSDHTGVGR
                     SIVYGVKQKDGQELSNDLDAQDPPEDMKQDQDIQAVATSLLPLTQANLRMFQRAQDDL
                     IPAVDRQFACSSCDHVWWRRVPQRKEVSRCRKCRKRYEPVPNDKMWGLAEFHCPKCRH
                     NFRHPLSPSQPCWPPGAGHRWGPHHPAMGAASLCIPLGSCLHAGTVTWIAAAHTPTPA
                     QPQIATTGESPTCLGPPVPIPRAGSRITSPKSCTLATPTSAAAPQWPHA"
ORIGIN      
        1 ggaccccgcg cagcgtgggg acatgtgacc gactgcagag gccgcgcgct gcatccccgg
       61 ccccgccgcg ctgctgcgca ggacgcggtg aggcgcgcgc cgaggcccgg gagcaccagc
      121 cgggagcact acagggcgcg cgagcagacg cgtggacaag gcctgggcgg ggtctcctca
      181 gggtccccag cttcggtcag aaacgaaact gaaagagggg cccgagggag gcggagctgc
      241 gccgacgcca cccaggcttg cgaggcccgg acccaggcgc ggccaggtgt gcttcagcca
      301 ccatggctca ggatggcgtg gagttggaga agagcgtcag gcgcctccgg gagaagtttc
      361 atggaaaagt gtcccccaag aaggcagggg ctcttatgag gaagtttggc agcgaccaca
      421 ctggagttgg gcgctctatc gtgtacggtg tcaagcagaa agatggacag gagctgagca
      481 acgatttgga cgctcaggac ccaccagagg acatgaagca ggaccaagat atccaggcag
      541 tagccacctc tctgttgccc ctgacgcaag ccaatcttcg aatgttccaa agagcccaag
      601 atgacctcat ccctgccgtg gaccgacagt ttgcctgctc ctcctgtgac catgtctggt
      661 ggcgccgtgt gcctcagagg aaggaggtgt cccggtgtcg aaaatgtcgg aagcgttatg
      721 aaccagtgcc aaacgacaag atgtggggtc tggcagagtt ccactgccca aagtgtcgcc
      781 acaacttccg ccatcccctc agcccctcac agccctgctg gcccccaggg gctgggcaca
      841 gatggggtcc ccatcaccct gctatgggtg cggcttccct gtgtatccca ctcggatcct
      901 gcctccacgc tgggaccgtg acctggatcg ccgcagcaca cacacccact cctgctcagc
      961 cgcagattgc tacaaccgga gagagcccca cgtgcctggg acctcctgtg cccatcccaa
     1021 gagccggaag cagaatcacc tccccaaagt cctgcaccct agcaaccccc acatcagcag
     1081 cggctccaca gtggccacat gcctgagcca aggaggcctc ctggacgacc tggaccacct
     1141 catcctggag gacctgaagg aggaggaaga ggaggaagaa gaggaggatg gtgggccccg
     1201 agagtgaccc tggccaggtg cacgaaggaa tgacagacac agtgaatgga cacctcctgt
     1261 tgctataaga taccagctca aggagatagg agcacccttg ggggggtact catgggacag
     1321 tcacaaccga acaagccggg tcagcatagc agccttcttc agagagtacg ccccaccacg
     1381 gaactcggcc cagtagaccc cgtcctggta tcggctccgg taatgacctc cgtgatacca
     1441 tacaccattg aggttggagt gggcgcaggc atggtaccac cagcccccac gatggtagag
     1501 ggcacagttg cctgaggggg gagagagagg agagagaaag agacagcatt cgttttccca
     1561 ccaaaataaa agtatctacc agcacttctt tgtgcaaagc ttttgcaagc aagcattcct
     1621 caaccttcca tatcttattg aatagaagcc ctgatactcc atttcttcac caaaataaaa
     1681 ggctgtggct tctcactttc ttcttcaga
//
