LOCUS       XM_008762216            1951 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus Src homology 2 domain containing F
            (Shf), transcript variant X1, mRNA.
ACCESSION   XM_008762216
VERSION     XM_008762216.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 14, 2024 this sequence was replaced by
            NM_001430478.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008762216.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1951
                     /gene="Shf"
                     /note="Src homology 2 domain containing F; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 5 long SRA reads, 9 Proteins"
                     /db_xref="GeneID:362205"
                     /db_xref="RGD:1562705"
     CDS             27..1481
                     /gene="Shf"
                     /codon_start=1
                     /product="SH2 domain-containing adapter protein F isoform
                     X1"
                     /protein_id="XP_008760438.3"
                     /db_xref="GeneID:362205"
                     /db_xref="RGD:1562705"
                     /translation="MLLSGAPPTGSGPGSRAQGSAGGGPGGSRRGAGGAGTAPGGGGS
                     GGVAKWLREHLGFRGGGGGGGTKPAPPEPDYRPPAPCPAAPPAPPPDILAAYRLQRDR
                     DFEDPYSGGSSVSAALSTPTVPGPTPPPRHGSPPHRLIRVETPGPPAPPPDSGPPASS
                     DRLAILEDYADPFDVQETGEGSGGTSGAAEKVPENDGYMEPYEAQKMMAEIRGSKETA
                     VQPLPLYDTPYEPEDEGASLEGEGAPWPRESRLPEDDERPPEEYDQPWEWKKERISKA
                     FAVDIKVIKDLPWPPPVGQLDSSPSLPDGDRDISGPASPLPEPSLEDSSAQFEGSEKN
                     CLSPGREEKGRLPPRLSAGNPKTAKPLGAEPSSPLGEWTDPALPLENQVWYHGAISRT
                     DAENLLRLCKEASYLVRNSESSKNDFSLSLKSSQGFMHMKLSRTKEHKYVLGQNSPPF
                     SSVPEIVHHYASRKLPIKGAEHMSLLYPVAIRTL"
     polyA_site      1951
                     /gene="Shf"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcggctcgct cagttgggag ggccccatgc tactgagcgg agctcctcct acgggctccg
       61 gccccgggtc gcgggcgcag ggcagcgcgg ggggcggccc cgggggatcc cgccgcgggg
      121 ctgggggtgc ggggaccgcc ccgggagggg gcggcagcgg cggagtggct aagtggctgc
      181 gggagcatct gggctttcgc gggggcggcg gcggaggggg caccaaaccc gcccccccag
      241 agcccgacta ccgcccccca gcgccctgtc cggccgcgcc ccctgcgccg cccccggaca
      301 tcctagccgc ctaccggctg cagcgagacc gcgacttcga ggacccctac tctgggggct
      361 cgtctgtgtc cgccgccctt tccaccccta cggtccctgg ccccacaccg cccccgcgcc
      421 acggctcacc cccgcaccgc ctcattcggg tcgagacccc ggggccccca gcgccgcctc
      481 cggactccgg accccctgcc agcagcgacc ggctggcaat cctagaggac tatgcggacc
      541 cattcgatgt tcaggagact ggtgaaggct caggaggaac ttcaggagct gcagagaagg
      601 tccctgaaaa tgatggctac atggagccct acgaggccca aaagatgatg gctgagatcc
      661 ggggatctaa ggagacggca gttcaacccc tacctctcta tgacacaccc tatgagccag
      721 aagatgaggg ggccagcctg gaaggtgagg gggctccctg gcccagggag tcccgcctgc
      781 cggaggatga cgagaggcct ccagaagagt atgaccagcc ctgggagtgg aagaaggaac
      841 ggatttccaa agcctttgcg gttgacataa aggtcatcaa agacctacct tggcctccac
      901 ctgtgggaca gctggacagc agcccctccc tgcctgacgg ggacagggac atctccggtc
      961 cagcttcacc cctccctgag cccagcctgg aggacagcag cgcccagttt gaaggatcgg
     1021 agaagaattg cctgtcacct ggccgggagg agaaggggcg gctacctccc aggctatctg
     1081 ctgggaaccc caagacagcc aagcccctag gcgcggagcc cagcagcccc ctgggggagt
     1141 ggacagatcc agcactgcct ctggaaaacc aggtctggta ccacggggcc atcagccgaa
     1201 cagatgcaga gaacctgctc aggctgtgca aagaggccag ctacctggtg cgcaacagtg
     1261 agagcagcaa gaatgacttc tccctctccc tcaagagcag tcagggcttc atgcacatga
     1321 agctgtctcg gaccaaggaa cacaagtatg tgctgggcca gaacagccca cccttcagca
     1381 gcgtccctga aatcgtgcac cactatgcca gccgaaagct gcccattaag ggagcggaac
     1441 acatgtccct gctctaccct gtggccatcc ggactctgta gatgtgagac cagggcagta
     1501 tgatagacct ggacccagcc cttgtcacct gcacgagggc tgcggttctt gctaaggaca
     1561 tgatgtcaga aacttggctt ccccttgtcc taggatctag taggcgctga agattcctta
     1621 atttattata aaggggaggg aatcatgggc cttggaataa aggggctgtg tggagctggg
     1681 aacagaggaa agcctgagga ggaaaggatc ttcccgcccc ggtcagacac tagggaggaa
     1741 gtggcgacct cccgcacgac ccaccctccg ccccttccct cttcggtccc ccagcccctg
     1801 tccccagagt gcccgcccgg gctcccagcc agaagctcgg ccaggcagaa ccgcggcagc
     1861 cggcgccgcc cagagactga cgggaggggg cggggagcga gccagactat aaatcggcgc
     1921 tggagccgac gccggccgcc tgcgaaaagc a
//
