LOCUS       NM_001399215            3296 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus SHC binding and spindle associated 1 (Shcbp1),
            mRNA.
ACCESSION   NM_001399215 XM_039095270
VERSION     NM_001399215.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Chen,J., Lai,F. and Niswander,L.
  TITLE     The ubiquitin ligase mLin41 temporally promotes neural progenitor
            cell maintenance through FGF signaling
  JOURNAL   Genes Dev 26 (8), 803-815 (2012)
   PUBMED   22508726
  REMARK    Erratum:[Genes Dev. 2012 Jun 15;26(12):1392]
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Schmandt,R., Liu,S.K. and McGlade,C.J.
  TITLE     Cloning and characterization of mPAL, a novel Shc SH2
            domain-binding protein expressed in proliferating cells
  JOURNAL   Oncogene 18 (10), 1867-1879 (1999)
   PUBMED   10086341
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 4, 2022 this sequence version replaced XM_039095270.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.54535.1,
                                           SRR26643429.51381.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               JAXUCZ010000016.1  91373871-91373999
            130-297             JAXUCZ010000016.1  91381169-91381336
            298-413             JAXUCZ010000016.1  91381454-91381569
            414-622             JAXUCZ010000016.1  91384500-91384708
            623-715             JAXUCZ010000016.1  91388730-91388822
            716-949             JAXUCZ010000016.1  91391358-91391591
            950-1118            JAXUCZ010000016.1  91391689-91391857
            1119-1239           JAXUCZ010000016.1  91392161-91392281
            1240-1371           JAXUCZ010000016.1  91395355-91395486
            1372-1490           JAXUCZ010000016.1  91398022-91398140
            1491-1577           JAXUCZ010000016.1  91400643-91400729
            1578-1719           JAXUCZ010000016.1  91401062-91401203
            1720-3296           JAXUCZ010000016.1  91403833-91405409
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..3296
                     /gene="Shcbp1"
                     /note="SHC binding and spindle associated 1"
                     /db_xref="GeneID:364648"
                     /db_xref="RGD:1590844"
     exon            1..129
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..2033
                     /gene="Shcbp1"
                     /note="Shc SH2-domain binding protein 1"
                     /codon_start=1
                     /product="SHC SH2 domain-binding protein 1"
                     /protein_id="NP_001386144.1"
                     /db_xref="GeneID:364648"
                     /db_xref="RGD:1590844"
                     /translation="MADDLQAGVVLEPDAMVPPRPELAAEEEPASWKEGLFQDTDPCS
                     DCGYHANPGATVKTLMPEGKILFPQIIQTNELLFYERFRAYQDYILADCKASEVKEFT
                     VSFLEKVLEPSGWWAVWHTNVFEVLVEVTNVDFAALKAVVKLAEPCIYESKLSTFTLA
                     NVKELLDLKEFHLPLQELWVVSDDSHEVHQMALAIEHVRFFYKNIWRSWDEEEEDEYD
                     YFVRCVEPRLRLYYDILEDRVPSGLIVDYHNLLSQCEESYRKFLNLRSSLSSCNSDSE
                     QENISMVEGLNLYSEIEQLKQKLKLIENPLLRYVFGYQKNSNIQAKGTRQNGQKVIHV
                     VSSTMKTGLLRSLFRDRFCEESCKEETEIQFHSDLLSGINACYDGDTVIVCPGHYVVH
                     GTCCIADSIELEGYGPPDDIIIEKRGKGDTFVDCTGMDVKISGVKFIQHDSVEGILII
                     HHGKTTLENCVLQCETTGVTVRTSAELFMKNSDVYGAKGAGIEIYPGSKCTLTDNGIH
                     HCKEGILIKDFLDEHYDIPKISMINNVIHNNEGYGVVLVKPTIFCDLLEHAQDETNDN
                     TVQKNKEADVTEGLDLEEMLQCVSNKMEPYATADFNEQAKGNCEIINELLAISMQKGR
                     MKKRLSELGIVQADDDLMSQEMFIEIVGNQFKWNGKGSFGTFLY"
     exon            130..297
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            298..413
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..622
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            623..715
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            716..949
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1118
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1239
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1371
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1372..1490
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1577
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1719
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..3296
                     /gene="Shcbp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgacagccg cccgcgtaaa ttcgaaatgg ctgatgattt gcaggcgggt gtagttctgg
       61 aacctgacgc tatggttcca ccgagacctg agttggcggc ggaggaggaa ccggcgtcct
      121 ggaaggaagg tttattccag gatacagatc catgcagtga ttgtggctat catgctaatc
      181 caggtgctac tgtaaaaact ctaatgccag aaggaaaaat tctttttcca caaattatcc
      241 aaacaaatga acttctgttt tatgagcgat tcagagccta tcaggattac attttagctg
      301 actgtaaggc ctctgaagta aaggaattca cagtcagctt cttggaaaag gtccttgaac
      361 catctggatg gtgggcagtc tggcacacta atgtgtttga ggtgttggtt gaggttacaa
      421 atgtggactt tgcagcattg aaggcagtgg tgaagcttgc agagccgtgt atctatgaat
      481 ctaaattgag cacttttacc ttggccaatg tgaaggagct tttggacctg aaggagtttc
      541 atctgcctct gcaggagctg tgggtggtat cagatgactc acatgaagtt caccagatgg
      601 cccttgcgat cgagcacgtc agatttttct acaaaaacat ctggagaagt tgggatgaag
      661 aagaggagga tgagtatgat tattttgtca gatgtgttga acctcgattg agattgtatt
      721 atgatatact tgaagatcga gttccctcag gacttatcgt tgactaccac aatctgttgt
      781 ctcaatgtga agagagttac aggaaatttt taaatctgag aagcagtttg tcaagttgta
      841 attctgactc tgagcaggaa aatatctcca tggtggaagg gttaaatttg tattcagaaa
      901 ttgaacagtt gaagcaaaag ctaaaactta ttgagaatcc tttgttgaga tacgtttttg
      961 gttatcagaa aaactctaat atccaagcaa agggtactcg tcaaaatggc cagaaggtca
     1021 tccatgtggt ttcctccacc atgaagacag gtctgcttcg gtctctattt agggacaggt
     1081 tttgtgagga gtcttgcaaa gaagaaacgg aaattcagtt ccatagtgat ctgttgtctg
     1141 gtataaatgc ctgctatgat ggtgacactg tcattgtttg tcctggccat tatgtagttc
     1201 atggcacctg ctgcatagct gactccattg agttggaagg atacggtccc ccagatgata
     1261 tcatcattga aaagaggggc aaaggagata cttttgtgga ttgcacgggt atggatgtta
     1321 aaatttcagg cgtaaaattt attcagcatg attctgtaga aggaatctta attattcacc
     1381 atggcaagac caccctggaa aactgtgtac tgcaatgtga aactacagga gtcacagtgc
     1441 gcacatcagc agaacttttt atgaaaaact cagatgtata tggtgccaag ggtgctggta
     1501 tagaaatata tcctggaagt aaatgtaccc tgactgacaa tggaatccat cattgcaagg
     1561 aaggaatcct cattaaggac ttccttgatg agcattacga tattcccaaa atatctatga
     1621 taaataacgt catacataat aatgaaggtt atggtgttgt tttggtgaag cctacaattt
     1681 tctgtgacct actggaacat gcccaagatg aaactaatga caatacagtt cagaaaaata
     1741 aagaggcaga tgtcactgaa ggattagatc tggaagaaat gcttcagtgt gtgtctaaca
     1801 aaatggagcc ttatgccaca gcagacttta atgaacaagc taagggaaac tgtgaaatta
     1861 taaatgaact gcttgctatt tccatgcaaa aaggccggat gaagaaaaga ctgagtgaac
     1921 ttgggatcgt acaagctgac gacgacttaa tgtcacagga gatgtttatt gaaattgtgg
     1981 ggaaccagtt taagtggaat ggcaagggga gttttggcac ctttctttat tagctacaat
     2041 gagaccaata gctcacaaag tattgtgttt tgacatgtcc taagcacgct acttatatac
     2101 gttgcttcat ttgcttcata actgtatatt atataaagtg tacttgatta agctcgtgtg
     2161 aaatatgggt ttatttctac ctaaatgtat tatatacaga gcacaccttt gtaggaaagc
     2221 cataaaaaac agaaaatatg aatgtacatg tagctcaata gtagagcatt tgtctaacac
     2281 gtccaaggcc caaggttcaa tacccagctc tccccctcgc ttccctcccc aaaaagaaag
     2341 aaaactaatt ggagatttct tatctagaaa atcccctttt ttaacggaat agctctgcta
     2401 tattgagcct tctagtactt tttttttctt gtaaataccc tttagcattg aaggtgaaag
     2461 agaaagaggt gcaagatgtg agagtaagtg tgcagtaggt gtcatgtgtt cagtgtcctt
     2521 tgtttgtttg tgatagtgtc tctctagaaa ctcagtgtgt aaaccatgct ggtctcaggc
     2581 tcattgactc gccttacctc tgcctcccat gtgctgagat tagagacaca tgccaccata
     2641 cctagtttga atgggatact tttttaattg aaattattgt cattaaatag gtcacaggta
     2701 tgtgttcaga gccagtattg aatataaatg attataagaa tatttaattg catgtaaaac
     2761 ttttgaagta tgcaaaagta tgttacagtt aacatttttt tcctgacttt ttaggcatgt
     2821 gaaaatttca taaaactgtt gtttgaaatt tttctatttt ctctgctcat cagctaaaac
     2881 ctctcaaagc ctcttcccac aggtaaagct taatgagctg ggtcaacaat gctcccatcc
     2941 aggtggtcca aatgcagtga gaccaggacc tgagatattg ggatttagac atcacatggt
     3001 gaaagctcag agtaacctga tttgatgagt ttgaattgag ggataaatgt gtagcaggac
     3061 aggtctttct tgttttgtat atgaaggctt caaactacca gggtatcaca attaaagacc
     3121 agttttgaaa tgtactggcc caatggactg aggattaggg agacaaaata tataaatata
     3181 tttattacag ttcctcgcat tgtggtgacc tataaccata aataatataa aataaaaatt
     3241 agaaaaatta ataatatatc acatttaata aaaataatgt ctttccttga aattca
//
