LOCUS       XM_006238148            2646 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH2 domain containing adaptor protein
            B (Shb), mRNA.
ACCESSION   XM_006238148
VERSION     XM_006238148.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427398.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006238148.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2646
                     /gene="Shb"
                     /note="SH2 domain containing adaptor protein B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 6 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 232 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362513"
                     /db_xref="RGD:1565350"
     CDS             534..2039
                     /gene="Shb"
                     /codon_start=1
                     /product="SH2 domain-containing adapter protein B"
                     /protein_id="XP_006238210.1"
                     /db_xref="GeneID:362513"
                     /db_xref="RGD:1565350"
                     /translation="MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERREQPPQAV
                     PQACSASSASCGSAAACFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSL
                     RKLRAMCRLDYCGGGGDPGGGQRAFTAAAGAAGCCCAAAGAGAAASSSSSSGSPHLYR
                     SSSERRPATPAEVRYISPKHRLIKVESAGAAGDPPGGVCSGGRTWSPTTCGGKKLLNK
                     CAAEETGAGQKDKVTIADDYSDPFDAKNDLKSKAGKGESAGYMEPYEAQRIMTEFQRQ
                     ESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSLRLRESKLPQDDDRPADEYDQPWEW
                     NRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVD
                     PTIPLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMK
                     LAKTKDKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL"
ORIGIN      
        1 gctcgggagg cggcggcaga ggcagcggca gcgccaggcg ccgccgggac gggcaagggc
       61 tcgcgggctc cgccaggcgc cggccgcctc tctcattcgc tctcttgctt tctgacccgc
      121 ggtggggccg ggctcgcccc agtgcactcg agaagcccgc agctggcgga ggctcgcacg
      181 gggcaggggc gcgctccgcg agggtggggg cgctgggtgc gggtgtgcac ggcggggggc
      241 gcccggcctt ccgctctagg cggcccccgg gccctatgag actcgtctgt gaggggcgcg
      301 agatccgaag ctcggccggc gcgcagcagg ggcggagggc tgtgcaacag cggccagagc
      361 cgggcggcgg ccggcaggag gcggcggctg cgagaacttg aacttggcga ccggtgcccc
      421 gcacgccccc caccggggca gaggcgctgc gggactgggc ggcagtgttg tcccccgaat
      481 ggccgcggcg gcggacgggg ctcgcgcgcc gcggccctag gcggcccttc gccatggcca
      541 agtggctgaa caagtacttc agcttaggca acagcaagac caagagtcca ccgcagccgc
      601 cgaggccgga ctaccgcgag cagcggcgcc ggggtgagcg gcgcgagcag cccccgcagg
      661 ccgtgccgca ggcctgctct gcgtcctcgg cgtcctgtgg gtcggccgcc gcctgcttct
      721 ccgcctcgtc gggctctttg cccgacgaca gcggcagcac gagtgacctc atccgcgcct
      781 accgcgcgca gaaggagcgc gacttcgagg acccgtacaa cgggccgggc tcgtcgctgc
      841 gcaaactgcg cgccatgtgc cgcctggact actgcggcgg cggcggggac cccggcgggg
      901 gccagcgcgc cttcacggcg gcggcaggcg ctgcgggctg ctgctgtgcg gcggcgggag
      961 cgggcgccgc cgcgtcctca tcctcatcat ccggctcccc gcacctctac cggagcagca
     1021 gcgagcggcg gccggccacg ccggcggagg tgcgctacat ctcccctaag caccgactca
     1081 tcaaagtgga gagcgcgggc gctgcggggg accctccggg aggcgtgtgc tctggcggcc
     1141 gcacctggag cccgacgacc tgcggaggca aaaaattgct caacaagtgc gccgccgagg
     1201 agaccggagc tggtcagaaa gacaaggtga ccatagcaga tgactactct gatccctttg
     1261 atgccaagaa cgacctcaag agcaaagcag gaaagggtga gagcgctggc tacatggagc
     1321 cctacgaagc ccaaaggatc atgacagaat tccagaggca agagagcgtc cggtcacaac
     1381 acaaaggcat ccagttgtat gacaccccgt atgagccgga aggccagagc gtggactcag
     1441 actcagagag cactgtgagc cttcggcttc gggagagcaa gctaccccag gacgacgaca
     1501 ggcctgccga cgagtacgac cagccgtggg aatggaaccg ggtcaccatc cccgccctgg
     1561 cagcccagtt caatggcaac gagaaacggc agtcctcccc gtcgccttct cgagaccgac
     1621 ggcgtcagct ccgtgccccg ggaggaggct tcaagcccat caaacacggc agccctgagt
     1681 tctgtgggat tctgggagag agagtggatc ccaccatccc actggagaaa caaatatggt
     1741 atcacggagc catcagcaga agtgatgccg agaaccttct gcgactctgt aaggagtgca
     1801 gctaccttgt ccggaacagc cagaccagca aacacgacta ctccctctcc ctgaagagca
     1861 accagggctt catgcacatg aaactggcca agaccaaaga caagtatgtt ctgggtcaga
     1921 acagcccccc tttcgacagt gtcccggaag tcatccacta ctacaccacc aggaagctac
     1981 ccatcaaggg ggccgagcac ttgtccctcc tctacccagt ggctgtgcgg actctgtgaa
     2041 aagaccagcc tcaccctgct ctgtgaccaa ccaccgacca gccctctgtg ctgccagccg
     2101 tgtccagtgt gtgtcgtgtg tatggtacaa gcacaccact gcatgtctta ggatgctgtc
     2161 gccacttaca gggttggaga aggcctggat gaaggggggc agcctgctgc cacaccaccc
     2221 cagcccctac cccatcccct ctgtgaatta aagtatttgc aatccaaaga gatgccttcc
     2281 agggtgaaca aaggtggagc tgctccagag gtgggcgggg ccctgcggtg ggtggggcgg
     2341 agccctggcc tgcatctctc tgttctccag ttgtcaggaa ctcacctgtg tatgggcaag
     2401 gttttcccat tggtgctggg agcccaggag gccctgggag ccaccctctc tggtctatgt
     2461 ctgtgttact gggtgtgcat attgagtgta cacaagagac catgtcctaa gccggagtaa
     2521 gcccccatct acttttagat gttcactctg taatcgttag atgtcaagga accattgtgc
     2581 agacaaagag ggcgcaatta tttatggata tgatagggtg tgtaaataaa atagtcattt
     2641 aatata
//
