LOCUS       NM_001108705            1360 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus SH3 and SYLF domain containing 1 (Sh3yl1), mRNA.
ACCESSION   NM_001108705 XM_001072907 XM_343045
VERSION     NM_001108705.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Hasegawa,J., Tokuda,E., Tenno,T., Tsujita,K., Sawai,H., Hiroaki,H.,
            Takenawa,T. and Itoh,T.
  TITLE     SH3YL1 regulates dorsal ruffle formation by a novel
            phosphoinositide-binding domain
  JOURNAL   J Cell Biol 193 (5), 901-916 (2011)
   PUBMED   21624956
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158742.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001108705.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158742.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1360
                     /gene="Sh3yl1"
                     /note="SH3 and SYLF domain containing 1"
                     /db_xref="GeneID:362724"
                     /db_xref="RGD:1306440"
     exon            1..154
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1176
                     /gene="Sh3yl1"
                     /note="Sh3 domain YSC-like 1; SH3 domain containing,
                     Ysc84-like 1"
                     /codon_start=1
                     /product="SH3 domain-containing YSC84-like protein 1"
                     /protein_id="NP_001102175.1"
                     /db_xref="GeneID:362724"
                     /db_xref="RGD:1306440"
                     /translation="MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKA
                     KGLAVLSVIKAGFLVTARGGSGIVLARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLV
                     IILNYDRAVEAFAKGGNLTLGGNFTVAVGPLGRNLEGNVSLRSSAAVFTYCKSRGLFA
                     GISLEGSCLIERKETNRKFYCQDIRAYDILFGDVPQPAQAEDLYEILNSFTEKYETEG
                     QRINLKKVAREQRKAKELPPKPSSRPQPSRPPVQLNAGSQSNRNEYKLYPELSSYHEK
                     TGSLSQPIEVTALYSFEGQQPGDLNFQAGDRIIVISKTDSNFDWWEGKLRGQTGIFPA
                     NYVTMN"
     exon            155..265
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            266..379
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            380..444
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            445..557
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            558..686
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            687..849
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            850..928
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            929..985
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1335
                     /gene="Sh3yl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cattggcaaa aacagggcac acacctattc cctcacctgg gtcaggtgtg cgcccgctgg
       61 gcgggtccgg tcggggaggc ggaccaagga gaacaccgtc ctcttcctgg actggagtga
      121 ggagcttggg cacggagcgg agccgctggc accatgaata acccaatacc ttctaatctg
      181 aagtcagaag caaagaaggc tgccaaaata ttaagagaat tcacagaaat aacttccaga
      241 aatgggcctg ataagatcat tcctgcccat gtgattgcaa aagcaaaagg tcttgcagtt
      301 ttgtctgtga ttaaagccgg gtttctggtc acagccaggg gaggcagcgg gatcgtcctg
      361 gcacgtcttc cggatggaaa atggtctgct ccttcagcca ttgggatagc tgggctcggt
      421 ggaggatttg aaataggaat agaggtgtca gatttggtga taattctgaa ttatgacaga
      481 gctgtagaag cctttgcaaa gggcggaaac ctgaccctcg gagggaattt tactgtggca
      541 gttgggcccc taggcaggaa cctggaaggc aacgtgtccc tgaggagctc tgcagccgtc
      601 ttcacgtact gcaaatcccg gggcctcttt gctggtattt ccctagaagg aagctgtctg
      661 attgaaagga aagaaactaa tcggaaattt tactgtcagg acatccgcgc ttatgacatc
      721 ttatttgggg atgtcccaca gcctgctcaa gcagaagacc tgtatgaaat ccttaattcc
      781 ttcactgaaa agtatgaaac tgaagggcag cgcatcaatc tgaagaaagt ggctcgggag
      841 cagaggaagg ccaaagaact acctccaaaa ccatcatcaa ggccacagcc atcacgccca
      901 cctgtgcagc tgaatgccgg ctcccagagt aatagaaatg aatataagct atatcctgag
      961 ctttctagct atcatgagaa aactggcagt ttgagtcagc caatagaagt gacagcatta
     1021 tactcttttg aagggcaaca gcccggggac ttgaattttc aagcaggaga cagaatcata
     1081 gttatatcaa agaccgactc aaattttgat tggtgggaag gaaaacttcg aggtcaaact
     1141 ggaattttcc cagccaacta tgtaactatg aattaaagtt catacgattt tgttatttga
     1201 taattacaca aaaacatttc tacacagaca ggattcacta tttacatcag attgtttaaa
     1261 cacacccttg ctctgcaaat gtttttatcc agttgtaaaa tattttctct gcatataaat
     1321 aaatggttaa atcagaaaaa aaaaaaaaaa aaaaaaaaaa
//
