LOCUS       XM_017601803            5437 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH3 domain containing ring finger 3
            (Sh3rf3), transcript variant X1, mRNA.
ACCESSION   XM_017601803
VERSION     XM_017601803.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017601803.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017601803.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5437
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5437
                     /gene="Sh3rf3"
                     /note="SH3 domain containing ring finger 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:294557"
                     /db_xref="RGD:1589772"
     CDS             29..2665
                     /gene="Sh3rf3"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase SH3RF3 isoform X1"
                     /protein_id="XP_017457292.1"
                     /db_xref="GeneID:294557"
                     /db_xref="RGD:1589772"
                     /translation="MLLGASWLCASKAAATAAPGEGDDRQGEQQRGDQARTEEDMDES
                     SLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGVDE
                     LPANILLVRLLDGIRQRPRTGASPGSSPPARPGPGTFPALAGGAGGATGSPPRSPVFL
                     SAAAGSSTSSSLCDAATNRSVPVAKNLSQLPYAKALYSYEGKEPGDLKFNKGDIIILR
                     RKVDENWYHGELQGTHGFLPASYIQCMRPLPQTLPQGKALYDFEMKDRDQDKDCLTFT
                     KDEVLTVIRRVDDNWAEGMLGDKIGIFPLLYVELNDSAKQLIEMDKLCPAATTAYNYD
                     ALLSSDPSTVANVAPGPTLSSSGAVSAFQRRVDSKKNAKKRHSFTALSVTHKSSQASS
                     HRHSMEISAPVLISSSDPRAAARIGELAHLSCAVPTQDSSSAGPVPTAIPRAAAVAGE
                     QGMSPKVQLPLNMYLALYAYKPQKNDELELRKGEMYRVLEKCQDGWFKGASLKTGISG
                     VFPGNYVTPVSRVPGGAGSPWNNVLGGSPLAKGMATIMHPGGGSLSSPATATRSALPL
                     TTLQDHMQHPATSLPTGSCLRHTAQPAASQAGGTTIPTATHPSAQALDRPTATVSPLR
                     TQTSPSRLPSTSLRPRSVVSPQHSQQPPTQMCPRPAIPFTSAASAITPPNVSAANLSG
                     EVGGTPTSGLSTPSPINAGYKPDDKKNEKKEKKSGLLKLLAGASTKKKARSPPSVSPT
                     HDPQSAMDSSLQGAVGPEVSPLTIHGRAGSCPVESEMQGAIGLEPLHRKAGSLDLNFS
                     LSPSRQATLSTASIRPEPKPLPRERYRVVVSYPPQSEAEIELKEGDIVFVHRKHEDGW
                     FKGTLQRNGRTGLFPGSFVESF"
ORIGIN      
        1 tcgctgggcc cgcgccggcg cctcccccat gctgcttgga gcgtcctggc tgtgcgcgtc
       61 caaggcggca gccaccgcag ctccgggcga gggcgacgac aggcagggtg agcagcagag
      121 aggggaccag gcgaggactg aagaggatat ggacgagtca tcgctgctgg atttgttgga
      181 atgctctgtg tgcctggagc gcctggacac cactgccaag gtgttgccat gccagcacac
      241 cttctgccga cgctgtctgg agagcatcgt gtgctcgcgc cacgagctac gctgtcccga
      301 gtgccgcatc ctggtgggct gcggggtgga cgagctgccg gccaacatac tgctagtgcg
      361 cctgctggat ggcatccgcc agaggccccg cacaggcgcc agccctggga gcagccctcc
      421 tgcgcgcccg gggccgggta cgttcccagc gttggcaggc ggtgctggag gggcgacagg
      481 cagtcccccg cgttctcccg tctttctctc agcggcagca ggcagctcta cctcctccag
      541 tttgtgcgac gcggcgacta ataggagcgt gcctgtggct aagaacctat cccagcttcc
      601 ctacgccaag gccctctaca gctatgaggg aaaagaaccc ggtgacctca agttcaacaa
      661 aggggacatc atcattctga gacgcaaggt tgatgagaac tggtaccatg gggagcttca
      721 gggcacacat ggcttcctcc cagccagcta catccagtgc atgaggccct tgccgcagac
      781 tctgccccaa ggcaaagcac tttacgattt tgagatgaaa gacagagacc aagacaaaga
      841 ttgtctgacc ttcactaagg atgaagtttt aactgtgatc cggagagtgg atgataattg
      901 ggccgaaggc atgctgggag acaagattgg catcttccct ctcctgtacg tggagctcaa
      961 cgactccgcc aaacaactca ttgagatgga caagctgtgc ccagctgcca ccactgcata
     1021 caactatgat gccctcttgt cctctgaccc cagcacagtc gccaatgtgg ccccaggtcc
     1081 caccctaagt agctcagggg cagtcagtgc ctttcaacga cgtgtggaca gcaagaagaa
     1141 tgccaagaag cgccactcct tcactgcgct cagtgtgact cacaaatcct cacaggcctc
     1201 cagtcacagg cactccatgg aaattagtgc cccggtgctg atcagctcca gcgacccacg
     1261 tgctgcagct aggattgggg agcttgccca tctgtcctgc gctgtaccca cccaggactc
     1321 ctcttcagct ggacctgtcc ccacagccat ccctcgagct gccgcagtgg ctggagaaca
     1381 gggcatgtct cccaaagtcc agctgcccct caacatgtac ctggctctct atgcatacaa
     1441 gccccagaag aatgatgagc tggagcttcg caagggtgag atgtaccgtg tactcgagaa
     1501 gtgccaggat ggctggttca agggggcgtc attgaaaacc gggatctcgg gggtgttccc
     1561 cggcaactat gtgacacctg tctccagggt tcctggagga gctgggtcac cctggaataa
     1621 tgtgcttgga gggtctccat tggccaaggg aatggccacc attatgcacc ctggaggtgg
     1681 aagtctgagc agcccagcca ctgccaccag gtctgctctg cctctcacca cactgcagga
     1741 ccatatgcag cacccagcca cctccctacc aacaggcagc tgccttcgac acacagctca
     1801 accagcagcc agccaagctg ggggcaccac catcccaaca gctacccatc cctcggccca
     1861 ggccctggac cgtccaactg ccaccgtgtc acccctgcgc actcagactt ctccatcccg
     1921 cctacccagc accagcctcc gaccccgctc cgtggtgtcc ccacagcaca gccagcagcc
     1981 cccgacacag atgtgtcccc ggccagccat ccctttcaca tcagcagcct ccgccatcac
     2041 accccccaac gtcagtgccg ccaacctcag tggggaggtt ggagggacac ccaccagcgg
     2101 cctgtccaca cccagcccca tcaacgcagg gtacaaacca gatgacaaga aaaacgaaaa
     2161 gaaggagaag aagagcggac tgttgaagct gctggctggg gcctccacca agaaaaaggc
     2221 gcgctccccg ccatctgtat ctccgaccca cgacccccag tcggccatgg attcctcgct
     2281 gcagggtgcc gtgggccccg aagtgtcccc attgaccatc cacggcaggg caggctcctg
     2341 ccccgtagag agtgagatgc agggcgccat tgggctggag ccgctgcaca gaaaagcagg
     2401 ctccttagat ctgaatttct ctttgtcccc ctcccggcaa gcaactctgt ccacggcttc
     2461 cattcgccct gaacctaagc cactgcccag agagaggtac cgtgtggtgg tctcctaccc
     2521 tccacagagt gaagcagaga tcgagctaaa ggaaggtgat attgtcttcg tgcacaggaa
     2581 gcatgaagat ggctggttca aggggactct gcagaggaat ggccgcacag gtctcttccc
     2641 aggcagcttt gtggagagct tctgagggcc attgctcctg gccagcttct gctgtctggg
     2701 gtagagtgcc caagaagaca ctatgtgaac agaggacacc ttctcaccta ggtctgaggt
     2761 tctttctgag gttctttcta aagcaccgac caggaacaag cagactgggg cgatgactct
     2821 cccatgaagt ccttactgca agcacacatg ggcagtggcc tgtttgtgaa ggaaggccgt
     2881 accctgtgat ggatggaagc acatgtgggt gtgagagaga gagagcagta gcacagaaaa
     2941 cgttacccat ggagacaaac acactaccac gccacccggc ggctacagca ttgttagctg
     3001 tctgtaaggt tgggagcctg ggagggtata gagtggggcc acatgctagg gctgacagca
     3061 agcttcttcc ctgccttccc ggggtcctct atatacctct gtcacctgac attgagcccc
     3121 acagccaggg cactcatggt tcaggagcct cagagaaggg ctgtgagtct cccaaggtgt
     3181 ccagtggggt cttgtggggc acaggagcag aatcctcagg ctttgtctcc caccaggaca
     3241 atgagcagca ccgcctggtt ccaccgccgc tgtcgtccca ttgcttcctt cttatggcac
     3301 acctttttaa tgtacgactc tgagacttta tatatttcta ataggtcaga cgctgcatat
     3361 ttttcataca cctggtgctg attttttgta aaactagaaa ccaacttggg taagcttcaa
     3421 gggggaaaaa aagggaggta acatcaaaag aaagttttat atatttccca aatgaagttt
     3481 ggagcatatt gaggaattcc tatctgtaat gtcaaaatgc tggctggtgc cccacgaggc
     3541 gagggggagg cctgccaaga ggggcacatg gagttggaga gtgcctttcc tggctgttgg
     3601 aaacaggcta aaccataagc tccatcttgg taggagtaat tatgactaaa aagtggaaac
     3661 ctattaagga atggatacat ggatactgcc tttttgtgtg gcagaaagcg cgcgcgcgcg
     3721 cacacacaca cacacacaca cacacacaca cacacacaca cacacgcagg cacgcgcata
     3781 cactgacccc agaagcttcc tttgattgct ttagagagaa tgactaaaaa taacattctt
     3841 aaagggcgtc ttgctgccaa aatgcagctc atacaacagc tcaaatccac tatcttgcaa
     3901 aggttttttt ctccttttca aaagtaaata acttgcccta tgcggccagg caaactccat
     3961 ctgctagaga ccaaaggtac agcgacaggc acgagcctga tgcttacttt agacttacag
     4021 gcccggagac gctggaaagg aaggggcttg gtctgctctg aggcctccct gtaaggccac
     4081 tgtcacagca gtgtgcttct cgggaggctg gcctggtgtt actgtcacac cttaggaaca
     4141 cattcttgtt tttcaaaaat atcccgaaaa tagcaatttg tgagcctgtg tgtacatttt
     4201 tataaactca cacagccctg tgtatagcct ttggtagcag agggcattac tgctttccat
     4261 aataaaatta agaccatgta tcctcaacgt tcctatttgg ggatatgacc agctagttgt
     4321 gactgccggg tggctaccac atggaagcca gcacacccag agacagtctc acaccccccc
     4381 aggtgacaac acacttactg gacataaaaa actgttctga gccagctaga aactctaggt
     4441 caagcataag gatccctgtg tgcaggctca atgacagcca cagtatctac tcagtgtcac
     4501 cgataaacta cttgcccatc catgaacaaa agatctaggt gtggttcaac ccttggtgtc
     4561 accgtggaga tacacagatc tacaccctgg gggagacatg ttctcagtgg aaccagagct
     4621 aactccagat tccagacaat aagaacaagg ccttttcctc ctaaacaagg tcaactgagc
     4681 ccacagaaca gacttgacct gaagctgtcc tccacgaagc accggctgct tcatgcagag
     4741 gaaggagcag cttcatagaa agctaaggga agtatcaaag aatctttggg aaacatcagc
     4801 tggatcctct cgcagccagg tttacactgg gtccaccctg gggagagaag cagggccctg
     4861 gggctcatcc tcagctgggc ctcctgagat acacaatgag cccaatggtc tgagcatttt
     4921 gaatactcaa gcccattagc cttcaaaatc ctgttttcca cagtcaatgg cagaaaagag
     4981 gttcctttcc taaggtcatc ttcccttgag gacacgtctt ggctaccaaa ctgaagccag
     5041 cacctcatct agaaccttca catcccgtcc ctgccagcag catgtgccct tactcagaca
     5101 ctcggatttg gtggccacgt gggtttcatt cagtagttct cagcccttcg aatagagggt
     5161 cagcaaggag acaggacagt ttagccccca gaggactgat ggaacacgag agacaagagg
     5221 aggcataaat acaaggcggg gcaccccaaa accagcccag tagacatgga aacctttgta
     5281 ctttgcacaa cacacaccga gacacatgca cacatgtgct cccaacccca catatgtttt
     5341 tattatacac caatgtcagt gtgtgatttt agaggaattg acatagtggc aaaagctgat
     5401 gcctgtgttt gagtctttaa ataaaactga acatgga
//
