LOCUS       NM_001162535            1876 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SH3 domain containing 21 (Sh3d21), mRNA.
ACCESSION   NM_001162535 XM_342916
VERSION     NM_001162535.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Stelzl,U., Worm,U., Lalowski,M., Haenig,C., Brembeck,F.H.,
            Goehler,H., Stroedicke,M., Zenkner,M., Schoenherr,A., Koeppen,S.,
            Timm,J., Mintzlaff,S., Abraham,C., Bock,N., Kietzmann,S.,
            Goedde,A., Toksoz,E., Droege,A., Krobitsch,S., Korn,B.,
            Birchmeier,W., Lehrach,H. and Wanker,E.E.
  TITLE     A human protein-protein interaction network: a resource for
            annotating the proteome
  JOURNAL   Cell 122 (6), 957-968 (2005)
   PUBMED   16169070
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC162054.1 and AW528754.1.
            
            On Jun 27, 2009 this sequence version replaced XM_342916.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC162054.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1828              BC162054.1         1-1828
            1829-1876           AW528754.1         1-48                c
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1876
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /note="SH3 domain containing 21"
                     /db_xref="GeneID:362598"
                     /db_xref="RGD:1305090"
     exon            1..164
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1711
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /note="SH3 domain-containing protein C1orf113 homolog; SH3
                     domain-containing kinase-binding protein 1-like"
                     /codon_start=1
                     /product="SH3 domain-containing protein 21"
                     /protein_id="NP_001156007.1"
                     /db_xref="GeneID:362598"
                     /db_xref="RGD:1305090"
                     /translation="MVQSEFQLQSRAGRRAEASNWGDFGSDKGGLGNTDMPSIIPTSQ
                     RPPKLSNLTYDSPPDYLRTVSCPETCRVLFDYQPEAPDELALQKGDLVKVLRKTTEDK
                     GWWEGECQGRRGVFPDNFVIPPPPIRKLIPRKIISRESAPIKETKKLMPKSSLPTVKK
                     LAAAAPAPSKAKPPSTLNVDSQKRPSRNSGFNGGCLNAGSRQPGRKGSRTLQHSASSQ
                     EDEQKSPGKGPSRSKTPTSEKSRLPEKALDPEPIPAPDKVSTPKDLVPEKAPDSDKIP
                     TTENTTLVKAVTPESALSGDEPAKDEALDLKTAPHVDSAPALVKILTPEHMIFKEEPS
                     KDNIQYQHSPQEETTQRSESFISPNDIQVQGEYSPQPNSSDPSCCGVKQVSGSPAQSK
                     AEDVSAMEEANFLRKPLAKDEITPNSALPKKLPSEGAGPQKQVLPQESVPTPQVPHTV
                     KKIPDPEAPTLQPSVPLTSPKSKNDSVDELELLKAEVNSLKNRLALLELKLEQKMGEV
                     WKELKTEKLQSPEVQMTQRNQKSFKHAQTQTETQTE"
     exon            165..220
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            221..266
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            267..367
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            368..454
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            455..497
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            498..591
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            592..644
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            645..730
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            731..1581
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1639
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..1859
                     /gene="Sh3d21"
                     /gene_synonym="RGD1305090"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacggggctc cctgctcgag ctgcttccct gcttatctgg cctaggtcac cccatcgact
       61 ctcagagccc ccaaagatgg tgcaaagtga atttcaacta cagtccagag caggcagacg
      121 agctgaagct tcaaattggg gagattttgg aagtgataaa ggaggccttg gaaacacaga
      181 catgccttcg atcattccta cttcacagag gcctcctaag ctgagcaact tgacctatga
      241 cagccctcca gattacctgc ggacagtctc ctgccctgag acctgcaggg tcctgtttga
      301 ctaccagccc gaggcccccg atgagttggc gctgcagaag ggcgacctgg tgaaagttct
      361 gagaaagaca accgaggata agggctggtg ggaaggagaa tgccaaggca gaagaggagt
      421 ttttccagac aactttgtca tcccaccgcc cccaatcagg aagctgatcc cacggaaaat
      481 tatttctcgg gaatcagctc ctattaagga aacgaaaaaa ctgatgccca agtcatctct
      541 acccactgta aagaagctgg cagcggcggc ccctgcacct agcaaagcca aaccaccttc
      601 aacactcaat gtggacagcc agaaacggcc ctcccgaaac tctggcttca atggcggctg
      661 cctcaacgca gggtccaggc agcctgggag aaagggatcc agaaccctcc aacactctgc
      721 atccagtcag gaggatgaac agaaaagccc tggaaagggt ccctccagga gtaaaacccc
      781 tacttcagag aagtctcggc ttccagagaa ggcccttgac ccagagccga tcccagctcc
      841 tgacaaagtg tccactccaa aggacctcgt tccagagaaa gccccggatt ctgacaaaat
      901 tcccactaca gagaatacca ctctggtcaa ggctgtcact ccagagagcg ccctttctgg
      961 ggatgagcca gctaaggacg aagctcttga cctgaagacg gcccctcatg tggacagtgc
     1021 ccctgcatta gtaaagatct tgaccccaga gcacatgatt tttaaagagg agccttctaa
     1081 agacaacatt cagtaccagc actcacctca ggaagaaact acgcagaggt cggagtcctt
     1141 catatcccca aatgacatcc aggtgcaggg agagtactcc ccacagccga actcctcaga
     1201 tccatcctgc tgtggtgtca aacaggtcag cggctctcca gcccagtcca aggctgagga
     1261 tgtgtctgcc atggaggagg ccaacttttt aaggaaacca ctagccaaag atgagatcac
     1321 cccaaacagt gcactcccca aaaagctgcc ttctgaaggg gcgggtcccc aaaagcaggt
     1381 gctgcctcaa gagtcagtcc ccactcccca agtgccacat actgtcaaga agattccaga
     1441 ccctgaagct cccacacttc agccttcggt cccactaacc tctcccaaaa gcaagaacga
     1501 cagcgtggat gaactggaat tgttaaaggc agaggtgaac tccctcaaga acagactggc
     1561 gctcctggag ctgaagctgg aacagaagat gggggaggtc tggaaggagc tgaagacgga
     1621 gaagctccag tcgccagagg ttcagatgac gcagaggaac cagaaatcct tcaaacacgc
     1681 acagacacag acggaaacac agacagaatg agagcaggtt cagaccgaac ctcagcccaa
     1741 cctggaggga catctatcct gcttgggcca ccccggtcct tgcacacaac tttgagaaac
     1801 tccatggaag ttaaaaaaaa aaaaaaaacc ccaaaaaaac aaaaaaactc tgaaccctca
     1861 aaaaaaaaaa aaaaaa
//
