LOCUS       XM_006232783            5819 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus SH3 domain containing 19 (Sh3d19),
            transcript variant X4, mRNA.
ACCESSION   XM_006232783
VERSION     XM_006232783.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006232783.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5819
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5819
                     /gene="Sh3d19"
                     /note="SH3 domain containing 19; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 157 long SRA reads, 1 Protein"
                     /db_xref="GeneID:295171"
                     /db_xref="RGD:1304885"
     CDS             400..3615
                     /gene="Sh3d19"
                     /codon_start=1
                     /product="SH3 domain-containing protein 19 isoform X4"
                     /protein_id="XP_006232845.1"
                     /db_xref="GeneID:295171"
                     /db_xref="RGD:1304885"
                     /translation="MAEGRRREDEEEELRERRELGGPRRARSRALPGHSAADRNERHK
                     PEHRSSSQGPLSSIRAVIKRSSRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPP
                     PGLGFPSTPVGGSWRPNDLVPAELPPSYEQVIKEINQVQVNSTNNNNAAATPRSTITS
                     ATQTDFPEEIDGDPPPTLQAPLKPLQSSPAASAGNLPPGVAPLIVFDICEEQNCPEKP
                     SATRCPVPRPRSKTNLRPVARDAHSKEKNVPKSPVTPREDWPPQCLLDSTCNLDSQSV
                     MNIMNTEQSQNTIISRIKAFEGQTSTEIPGPPKKPEIIPRTVPPKPAVSSGKPLVAPK
                     PAANRASGEWDSWAENRLKVTSREGLTSYSSPQEAGITPVTKPELPKKPTPGLTRTAN
                     HETSGGRPMAESPDAGKKIPTPAPRPLLPKKSASPDAPPYPSVPPKLVSVPPRLSVTS
                     QAKAFRLPGEGPPSNPPVPAPQSKALGDIDLISFDDDVLPTSGSPAEEPIGSEMVLDP
                     FQLPTKTEATKERAVQPVPTRKPTVIRIPAKPGKCLHEEPQSPPPLPAEKPVGNTYSV
                     ASGRLSNSDRTRNPDLEQASESGSLVQGPPRLPPRPVHGKVIPVWRPPPKGAPERPPP
                     PKLSATKSSNKNLPFNRSSSDMDLQRKPCHLASGLSKAKSQVFKNQDPVLPPRPKPGH
                     PLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECRRGEGTGRVH
                     PSQMKIVTPLDEHPRSRPNGSGHTQKPVDSGAPHAVALHDFPAEQADDLSLTSGEIVY
                     LLEKIDAEWYRGKCRNQTGIFPANYVKVVVDIPEGRSGKRESFSSHCAKGQRCIARFE
                     YIGDQKDELSFSEGEVIVLTGYVNEEWGRGEIRDRTGIFPLNFVELVEDHPMSGANIL
                     STKVPPKTKNEDPGSNSQIPALKQDSSPPGEWCRALHSFTAETSEDLAFKRGDRILIL
                     ERLDSDWYRGRLHGKEGIFPAVFVQPCPAEAKSVASTMRKGKKVKALYDFVGENEDEL
                     SFKAGDVITELEPVDDDWMRGELMGKAGIFPKNYVQFLQVS"
     polyA_site      5819
                     /gene="Sh3d19"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aagaggccaa gcctccttgt ctctctcact caactcccca acccctttat ttattttgtg
       61 cacgtctgtt tgggttgtgg gggtgtttcc agcttgtgct gctggagggc ggcctcagca
      121 gcccgaaacc cctccccgag gaggcgaggc cggttgggag cccgcccgat cccaggctgg
      181 acctctgtgg ggcggggaag gggaccggac gggaagcgag ctgccgagct gctgcaggcc
      241 gctggtgtct gcccagaagg cggggagctc ggccgggccc gcgccccagc tccgcacgct
      301 gcaggtggag cccttcttcc ccgcggagcg cgctggcgag ggacacccgc tgcccgcagc
      361 tcgcccgccg tccccgggct gcgcggaggc acctcgccca tggctgaggg ccggcggcgg
      421 gaggacgagg aggaagagct gcgagagcgc cgcgagcttg ggggcccgcg ccgcgcccgg
      481 agccgcgcgc tcccgggcca ctcggctgca gatcgcaacg agagacataa gccagagcat
      541 cgttcctcaa gccaaggacc cctgtcatcc attagagcgg taatcaagag atcttctcgg
      601 acctgtattc aaagtgaact tcatcgggat aggaggcgcc cagagatcac cattgtggca
      661 gcagagccac tgaggccagc ctcgtggttt ccgggagctc caccaccagg actgggattt
      721 ccctccacgc ctgtaggagg ctcttggaga cccaatgact tggttcctgc tgagctccca
      781 ccctcctacg aacaagtgat aaaagaaatc aaccaagtcc aggtgaactc cacaaataac
      841 aataatgctg ccgccactcc aaggagcact attacttctg caacccagac cgacttccca
      901 gaagaaatag acggcgatcc acctccaaca ctacaggcgc ctctcaagcc tctccagtct
      961 tcaccagcag cctccgctgg caatctcccc ccaggggtgg cacctttaat agtctttgat
     1021 atttgtgaag agcagaattg tcctgaaaaa cccagtgcta caagatgtcc agtgccaaga
     1081 ccaagatcaa aaaccaacct cagaccagta gctagggacg ctcacagcaa agagaaaaac
     1141 gtcccgaaaa gtccagtgac tcccagagaa gactggccgc cccagtgtct gctggacagc
     1201 acctgcaatt tagatagtca gtcagtgatg aacattatga acacagaaca aagccaaaac
     1261 actattattt ccaggatcaa agcatttgag ggtcagacaa gcacagaaat cccgggaccg
     1321 cccaagaaac ctgagattat tccccgcact gttcccccga agcctgctgt ttcctcaggg
     1381 aaacccttgg tggcacccaa gccagctgct aacagagctt ctggagaatg ggactcgtgg
     1441 gcggaaaaca ggctcaaggt gacttccaga gaagggctca cctcatactc atcgccacaa
     1501 gaagccggaa tcaccccagt aaccaaacct gagttgccaa agaaaccaac tcctggcctt
     1561 acacgaaccg cgaaccatga gacttctgga ggaagaccca tggctgagag ccctgatgcg
     1621 gggaagaaaa tcccaacccc tgctccccgg cctttgctgc cgaagaaatc agcctcccca
     1681 gatgccccac cgtacccttc ggttccacca aaactggttt ctgttcctcc ccgactctca
     1741 gtaacatcac aagccaaagc attcaggtta cctggagaag ggccgccatc caacccccca
     1801 gttccagctc cacagagcaa agccctggga gacatcgacc tcatcagctt tgacgatgac
     1861 gtattgccca cctccgggag cccagctgaa gaacccattg gttctgagat ggttctagat
     1921 ccctttcagc tccccacaaa aacagaagca acaaaagaaa gagcggttca gccggtgccc
     1981 accaggaagc ctactgtaat aagaatccca gccaaaccag gaaaatgttt acacgaggaa
     2041 ccacaaagcc cacctcctct tcctgccgaa aagccagttg gaaatacgta cagtgtagcg
     2101 tctggaaggc tcagtaactc tgacagaact agaaacccag acctggagca agccagtgaa
     2161 tcaggaagct tggtacaagg accccccagg ttgccaccaa gacctgtgca tggaaaagtc
     2221 attccagttt ggaggcctcc ccccaaaggg gcccctgaga gacccccacc ccctaaactt
     2281 tctgcaacca aatcatcaaa taagaatctg ccttttaacc gctcctcctc cgacatggat
     2341 cttcagagaa agccgtgtca cttggcatct ggactctcaa aagccaagag tcaggtcttt
     2401 aaaaaccaag atccggtgct accccctcgt cccaaaccag gacaccctct ctacaggaaa
     2461 tacatgctgt cggtgcctca tggaattgcc aatgaagaca ttgtctccca aaaccccacg
     2521 gaactctcct gtaagcgtgg agatgtactt gtgatcctga aacaggcaga gaacaattac
     2581 ctggagtgcc ggcggggaga aggcaccggc agagtccacc cgtcccagat gaagattgtc
     2641 actcccctgg acgagcaccc cagaagcaga cctaacgggt caggccacac tcagaagcct
     2701 gtagacagtg gcgctcctca cgcggtggct cttcacgact tcccagcgga gcaagccgat
     2761 gatctgagtc tcacatctgg agagattgtt tatcttctcg aaaaaataga tgcagagtgg
     2821 tacagaggga aatgtaggaa ccagactgga atttttcctg ccaattacgt caaagtcgtt
     2881 gttgatattc cagaaggaag aagtggaaaa agagaatcat tttcatctca ctgtgctaaa
     2941 ggccagaggt gcatcgctcg gtttgagtat atcggagacc agaaggatga gttaagtttc
     3001 tcagaaggag aagtaatcgt tcttacaggg tatgtgaatg aggaatgggg cagaggagag
     3061 attcgagatc gaactgggat cttccccctt aactttgtgg aacttgtcga ggatcacccc
     3121 atgtctggtg cgaatatttt aagcacaaag gtgccaccaa agaccaaaaa tgaagaccct
     3181 ggctcaaatt ctcagatccc tgccttgaaa caggatagca gccctcctgg agaatggtgc
     3241 agagccctcc acagtttcac agcagagacc agcgaggact tagccttcaa acgtggagat
     3301 cggatcctga tcctcgagcg tctagactct gactggtacc ggggccggct gcatggcaag
     3361 gagggcatct tcccagcagt gtttgtacag ccctgcccag ctgaggcaaa aagtgtggct
     3421 tccacaatgc ggaaggggaa gaaggttaaa gccctgtatg attttgttgg ggaaaacgaa
     3481 gatgaactct ctttcaaggc tggagatgta ataacagagc tggaacccgt ggatgatgac
     3541 tggatgcgtg gagaactaat gggaaaagct gggatctttc ccaaaaacta cgttcagttt
     3601 ctacaagtca gctgaaggtg aagcttggct gttccttgac acgagaactc acttgaacat
     3661 tcactttgac tatcagatat ttgcactatt tttttttaaa cagaaagaga aatatctaag
     3721 atgtatgtgg cacactagaa tttctgaggg cagaaaacct gtaggtttct tagcttagct
     3781 tcgtttgtgg aaaggtgtac ggagaaatgg agagtgagga agccggcagg gaagtgtgct
     3841 tcccctggga aagcatccag tgcaggcagg cagcatgggt cggctaacaa gcaggaactg
     3901 tactcatacg cctgttccca tcaacacact gaattaacca tgcttcttca ttttctactt
     3961 tagtttaaaa agaggacgtt tgacattcta catgctgtaa ctatcaggac atggatggta
     4021 atctgaattt cgtttttgat attcaaatta attctaacag cttgagcaca ttagtcttag
     4081 tcctggggcg gaagcttgct gcaggacaga tagtttgtaa ctagtggaac atttacaagc
     4141 aggtggggaa ataagctcat gtccccaagt gctccttgtg tcccagcatt ccccatttat
     4201 ccagggactc gaaggggtca aaagaaccaa aaccatccct aagatgcctt gctaatacaa
     4261 ctaacccctc cacagacatg ccacaactta cctctcctcg gtggatgtgt atgttaacag
     4321 ggtcattata aagcacattt tctgaatctg caatcattcc tttgacaatt actggtcagc
     4381 tcattgactc aaggaaaact cattttcttt gcattacccc agtaatacac aaaagctgga
     4441 tcttgttaca gtagtgcgtt atgaatctcg gagagtatct tagaatacag agcaaagggt
     4501 aagatgaaaa acagtgccga gcccccacag ctcacttcgt ctcgctatat cagaagttaa
     4561 aataatttaa gaggactgaa ggctgacgca gtaccccccc acccccaacg catctctgca
     4621 gctattggag taaacacaag accactttcc tgtcatccag ggtcacacgt tctgagtttc
     4681 aaaagtggtt cttgtgtgac tcaatcaatt acagtttatg aactaaagcc aaatgctctg
     4741 aagacaatct aataatggat tggtgggtta gcatttcgct ggagatgtga aatgctctcc
     4801 aacagggttc ttctgtttcc aagaagagtt tcatatgctg gaccacttct taatttttcc
     4861 tgttttccca attatccaaa acctgggtgg ccagtgattt cctgaacaca ctgcttctat
     4921 aaggaaatac ctactttgtg ttttttacta aatttcctat ccctggcata tgattgcatt
     4981 tgattttggc attttggatc tggggtttct actacatgtt tttgtttaag actatttaaa
     5041 gaaaatcatt gtaggtttcc actcaaatca cttttacgag aatgggaaga cgtaaagtgt
     5101 tattcaaact aaattctcat cgtcagcaag ccatataaga gcaagaaggg gtcagcggtg
     5161 tggagagggg tatgaagtgt ttctttgcct gtgagatttc aatttaatag tgaggatact
     5221 gaacaacctt tctctattga agaaaaaaat ccctcttgat attggctctc tgtaagcaga
     5281 ataagtgcaa tagttgtgta tctacttgac actataataa actgaactca acttttcaat
     5341 tccttaccgc agacgagact gcatctttca gaatgtgagc ctacctgtct tatccttgta
     5401 tctcccgtcc tttgtttgca gggcgggtgt ggtggacaga tggcggcttt ccactcagca
     5461 cctttgcttt tgttgatgca aatatatatt gaaacaaatc cttttttttc cttcttttgc
     5521 catctcactc taccatgctg tttttcttgc tatgtatttc tctctcaact aataggaagc
     5581 aaaatgtagc tgtggggctt gcatgggtac tttcttatta taaattgatt gaggtcaagg
     5641 caatagtcaa agaaaaacaa ttgtatatga agagaatttt atgagataaa tggaaagggg
     5701 ttattgtgct tgtttcagat tttttaggtg aaagtttgat actgttctca tctttgtgag
     5761 tcagcttttc atagctgtga caaaatactc aatcataaac aacttaaagg agaaaacaa
//
