LOCUS       XM_039108709            1467 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH2 domain containing 6 (Sh2d6),
            transcript variant X1, mRNA.
ACCESSION   XM_039108709
VERSION     XM_039108709.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108709.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1467
                     /gene="Sh2d6"
                     /note="SH2 domain containing 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 13 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:691161"
                     /db_xref="RGD:1587427"
     CDS             7..1179
                     /gene="Sh2d6"
                     /codon_start=1
                     /product="SH2 domain-containing protein 6 isoform X1"
                     /protein_id="XP_038964637.1"
                     /db_xref="GeneID:691161"
                     /db_xref="RGD:1587427"
                     /translation="MQIMGTTGPLSLRTFVAVPGLWRGKGSLLIYLAMDRFSGSKARL
                     GPPLVPARCADTQVWRENVASTSFPTGPETWRQRHPFLKAQEEVEEEDKYELPPCEVL
                     SLSLAPAQSFGSNENSLYLDRSGPLDPSKLPPPPPQPTKASGLPINPSFPNRPTSGYH
                     FPLKTAMNLQPATPKQGPIFGRRGRGTPARVATDRAEKPDEDIYLECEPDPPPALTRS
                     LSSKALMPPVPLPRTSGLPKPVVGHQEARNEAVDAALKAGRKLSASSAASAAEDGSLL
                     GQPWYSGNCDRQSVERALLHFQKDGAYTVRLSSGPHSSQPFTLAVLLRGRVFNIPIRQ
                     LDGGHHYALGREGRNHEEIFSSVTAMVQHYMKHPLPLVDRHSGSRGFTCLLFPTKP"
ORIGIN      
        1 taaataatgc agataatggg aacaacaggg cccttgtctc ttaggacatt tgtggcagtg
       61 cctgggctct ggagaggcaa agggtccctg ctcatctacc ttgccatgga caggttcagt
      121 ggcagcaagg cccggttggg gccaccactc gtacctgcca gatgtgcaga cacccaagtg
      181 tggagagaaa atgtagccag cacgtctttc ccgactggcc cagagacgtg gagacaaagg
      241 catccctttt tgaaggccca ggaggaggta gaagaggagg ataaatatga gctgcccccc
      301 tgtgaggttc tgtccctcag tctggccccg gcacagtctt ttggctctaa tgagaactcc
      361 ttgtatctgg atcgttctgg gcccctggat ccatccaaac taccaccgcc cccacctcag
      421 cctaccaagg ccagtggact ccccataaac ccttcctttc ctaatcgccc tacctctggc
      481 taccatttcc cgctgaagac tgcaatgaac ctgcaacctg caaccccaaa gcagggacct
      541 atttttggaa ggcgagggcg aggtacacct gctagagtgg caacagatcg ggcagagaaa
      601 ccagatgaag acatctacct ggagtgtgag ccggatccac ccccagcctt gactaggtct
      661 ctgagctcca aagccctgat gcctccagtt cctctgccaa gaacatctgg attgcccaag
      721 ccagtggttg gtcaccaaga ggctcggaat gaagctgtgg atgccgcgtt gaaagcagga
      781 aggaagctgt ctgcttcctc tgcagcctct gctgctgagg atggcagcct gctgggtcag
      841 ccttggtact ctgggaactg tgaccgtcag tctgttgaga gagccctgct tcacttccaa
      901 aaggatggag cctacacggt gcgcctcagc tctgggcctc acagttccca gcccttcact
      961 ctggcagtac tcctcagagg ccgggtcttc aacattccca tccggcagct agacggcggg
     1021 caccactatg ccctgggtcg ggagggcagg aatcacgagg agatcttctc ctctgtgact
     1081 gccatggttc agcattacat gaagcacccc ctgcccctcg tggaccgaca cagcggcagc
     1141 cggggattca cctgcctgct cttccccacc aagccctgaa gaaaaaacag gacacaaatc
     1201 cacctttggc acatagtgtg ccccattcac tttccctccc actttaggct gctttctttt
     1261 ccctgccagc ctccacccca aaagccctgc aggttcaaaa tgagaggcat taaaatgacc
     1321 cacctgggga ggttggcttc ctcagagaca ttgcctctcc ttagactgac ttctcgtgac
     1381 gggttaacat tctccggagg aactactttc ccagcacaca gtatactttc aataaacatg
     1441 tattgactga attctgttaa taccgaa
//
