LOCUS       XM_039084349            2619 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH2 domain containing 3A (Sh2d3a),
            mRNA.
ACCESSION   XM_039084349
VERSION     XM_039084349.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-223               JACYVU010000204.1  1905617-1905839     c
            224-1000            JACYVU010000204.1  1898216-1898992     c
            1001-1001           "N"                1-1
            1002-1075           JACYVU010000204.1  1898142-1898215     c
            1076-2619           JACYVU010000204.1  1896492-1898035     c
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2619
                     /gene="Sh2d3a"
                     /note="SH2 domain containing 3A; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100360476"
                     /db_xref="RGD:2322080"
     CDS             857..1279
                     /gene="Sh2d3a"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: SH2 domain-containing
                     protein 3A"
                     /protein_id="XP_038940277.1"
                     /db_xref="GeneID:100360476"
                     /db_xref="RGD:2322080"
                     /translation="MFQLGRNASPQEQKAGSTGSPVCLSILPHFVISCQGYRPAGSDQ
                     ESGSXHGRLLWSGTTHTSSWPSPEVGGGELAVLGCSGPLEERTAALKGLVELALVLRP
                     GATGDLLGLAGVMGTLHMPQVCWEQGWAGSQGISDRKD"
ORIGIN      
        1 ggctgggctc cagccaggta agggcaggcg agggcatgtc ccagtgtgga cattttgctt
       61 ctcagccgtt gagcctctag gttgtgtccc gtcggatcac cagagtcctg tgcagatgag
      121 ttagatccct gggttcctac tggtcagggt ggagtcatca gcccctaggg agaacctgag
      181 gatccatcca agacagtctg cgggggccgg aataagtctc caaacatgca gtgaacccac
      241 gttgttgaag ccaaggagga agaggaagga gagggacaga tgcttcataa gaccacaagc
      301 tggggtctca ttttgctcct ctggccaccc ttcctgcttg ctgggtctga agaatcagcc
      361 tttggaccct gcagtcctgc gcactctcag aagcttatct gtggcacacc atttggggag
      421 tactgctctg cacctgctgt tggtggattg ccaggtgggt catctgctag gatcccccgt
      481 taccaaagag ctaatctgtg gcttttcctg gggagttgta aaggcaccag gggcagaagg
      541 aaacggtttc aactgagtct aacttagtga cctggagaat ttgtggggtt acttccctga
      601 gtacaggtga gaggtcactc acaggagcat tggtgactga ctcaaaggca gcagcatcgt
      661 ttaaaaagcc caaagccagc ttgggtatct actcacaaag tcttgtgccc tgcaggcagc
      721 tggttactgc ttatgaattt tgtgaacctt gtaagcttca gagattacct gagacttctg
      781 agtttcctct acttccctag tcttgccaat aattccctgc tcttcctaga agcctgcctg
      841 ctccctccag gcaggaatgt ttcagttagg aagaaatgct tcaccacagg agcagaaggc
      901 aggctccaca ggatcaccag tatgtttgtc tattttaccc cactttgtaa tctcctgtca
      961 aggctatagg cctgctggga gtgaccaaga gtcagggagt ngccatgggc gtctcctctg
     1021 gtctggaact actcacactt cctcatggcc atcacctgag gttggaggtg gagagctggc
     1081 tgtgctgggt tgctcggggc ccctggagga gcgcacagcc gctctgaaag gcctggtgga
     1141 gttggcattg gtgctgaggc caggagcaac aggggacctg ctgggactgg caggggtcat
     1201 gggcaccctg cacatgcccc aggtgtgttg ggaacaggga tgggcaggaa gccagggtat
     1261 aagtgacagg aaagattaag tgggattcct gtctctgtat ccaggcatcc aggttagaga
     1321 gcacctggtc tttgaaaaag agctaaagcc tctgatgagg gctttggatg aagacacaag
     1381 tgagaggcct tgactgtgcc ttacctgcct tgggctgttt ctcaacccta gttctccttc
     1441 ctagccacct tcttcaggct tcttcccaac cccacgctcc tactttgctc actgctcccc
     1501 tttctgctct aagttttccc cttcccactt ttaggcttcc tgctctaagc taccaccttt
     1561 gccacatgct cctcccctgc cccagcctcc taccctgctc caagctcccc ctcccgccct
     1621 ccttgcttta ggctcctccc ctgccatttg ctcctggcat ttcagtcttc tccgcccctg
     1681 ctctaggtcc tagattcctc cctggcctca tgattggccc catcctaggt ccctccttct
     1741 ttaactaaat ccttcctcaa tcctaaacac cacccccctc cctagaccct gaccctatcc
     1801 ctgaccttgc cccacctcca cccccttacc cgaaagtctt tgaccacgcc attccccaac
     1861 ccagatcctt ctcttccaac aataccctgc accctaggag aagtgaccct gccacatgtg
     1921 gcaccagcag tgcgtctgct ggagggtgag gaaacctctg tggctggctg ctgcgcaccc
     1981 tgcttggggc caacaggtgg cccatgatgc acccctgttc tgcggggcag ctgcccagag
     2041 tctgcaaggt gaacaagggc cccttgaagg cctcttaggc caagctttgg tctcacttag
     2101 cttagacctc taaaggtcta actgcagtca tgaacgccaa atactgctta ccacaataaa
     2161 agggaccagt gagccagcga agctacatcc atagtgtctc actccaactt ctggcctggg
     2221 aagatcccct ctcagatgat tattggggtc ccttacaaga tgactccttc cctagtcaga
     2281 atcccatctt cttcctggcc caacccaact actaagactc ttattctggg tcatttctaa
     2341 gactttagat gtctccaccc tctacagggg caagctgggt gcacatgtcc ttcagttcta
     2401 cctccaggca ttagtcccta aggcagggac ccctgcactg tggatccaga ctgaccaccc
     2461 ttatgcccca tggttgtctt gcaacctgct ctcctgtaga aaccaagggg tacctttcct
     2521 cccctaaccc ttgaccagac actcccccat ggctccaaca ggtcaaagtt cttagcaagt
     2581 atgggagagg cctgagccac acccccaacg cacctgact
//
