LOCUS       XM_039091409            2233 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH2 domain containing 1B (Sh2d1b),
            transcript variant X1, mRNA.
ACCESSION   XM_039091409
VERSION     XM_039091409.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2233
                     /gene="Sh2d1b"
                     /note="SH2 domain containing 1B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:501869"
                     /db_xref="RGD:1563935"
     CDS             1727..2137
                     /gene="Sh2d1b"
                     /codon_start=1
                     /product="SH2 domain-containing protein 1B isoform X1"
                     /protein_id="XP_038947337.1"
                     /db_xref="GeneID:501869"
                     /db_xref="RGD:1563935"
                     /translation="MDLPYYHGCLTKRACEALLLKGGADGNFLIRDSESVPGALCLCV
                     SYKKLVYSYRIFREKHGYYRIQDPTRKEDFPSILLLAANRKTSLRFHPVTPVTLFARN
                     INWNLFLLTAPDGESTYILSYRLRLMFQERSFQT"
ORIGIN      
        1 ctctgagaca tctctccaag cccatgtgtg tatttataca tacatattat atgcatgaaa
       61 aatttgaaat gaagtaactt gaggtggggc aacagtgccc ttgtattaga caccacaagc
      121 taacaattaa gaatcctagt gccaagaatg atgtgcctat tttgcagttg tccagtgagg
      181 tactgtagac ctcaaacatt tgaggccatt gaattgttct tggctattct taaggaatat
      241 atggtactga agacaccata tacttcaatc acaaaagaca gagaaattaa gtttgattct
      301 cacttggaag cttcattttt ttagctaggt ttcctagtac tgaaaggtgc tatacatgct
      361 actagagaag gaaaggaatc atgtcttacc tagctgtgag cctatgagat aaaatgatga
      421 ccaacctagg acaatatacc cactggtgca acagtggtac aaatgtcata aaagtaacca
      481 acccaacttc tgattggaag tcaggatcac tccactaggt gaaattgtaa catgccccta
      541 gaccttagta ggccaccagg ccttagaact gatgccatga taaaaatacc atccaggaaa
      601 taaaactcat aatatagaca ctactgtgtg ctaagacagt ggtgctcaac ctttctaatg
      661 ctatgacccg ctaatacagt tactcacatt gtggtaatcc ccaaccataa aattacttca
      721 ttgctacttc ataactataa ttttgctact attatgaatc atagtttaaa tatctgataa
      781 atgacccact tgagaaccgc ttggccaaaa caaaacaaag acctaatcct tcaaagtcct
      841 cagatctgat aacgtctcta aaggtactaa ccttgtgttc tgccctctat atttctgctt
      901 caagctgttc ttcgtaaagt gtgttaactt acgatgtggt ttgtgcttaa aaggtcaacc
      961 cccaaaatgc tcggggatat actgggacct caaacaccca gtggattttc tggctagcta
     1021 ataaatgcat atccagctag tcttctatga tgtttacccc aaaacagaaa tttatgcttg
     1081 acagtgttat tggggccaag aacccattac gaaagaggtc cttgtactta gagaagaacc
     1141 tgctactatt actttgttaa atggacatgg tattaaacca aatcctaatg gcttattatt
     1201 attatatcca cagagcagtg catttctcaa ccttcattag ggaagctaaa tttgaaacag
     1261 atggccataa atgcaaagca tgatctgaga aaatccaaga agaaaatgga tacctagtac
     1321 tgcagggtta gtggtatggt cccttggaag cacaccagta gccataaagg cagaaaactg
     1381 tgagtcacac tataacctgg acctagggag cttgacatta ctgctgctgc agcagccaca
     1441 aatggcactg actgagctgg aaggtacaac tcacccgctt gtatgagtca tacttgagcc
     1501 acccgcccta ggctacagtg acatggtcac tccatctccc ccccttctca tttcctgtgt
     1561 cttgtaaagc tcactgaacc ccacagagca actttatttg ttcagaccac actggaggaa
     1621 gggacatttc ccctccactc gtctctccac ttccccctgc acggctcctc cttggcctgg
     1681 agcgggatct cggggtgaca ggacagttta agcataacca ccctccatgg atcttcctta
     1741 ctatcatggc tgcctgacca agcgagcatg tgaagccctg ctcctcaagg gaggagcaga
     1801 cggcaacttt ctgataagag acagcgagtc tgtgcctgga gccctgtgcc tctgtgtctc
     1861 gtataaaaag cttgtctaca gctaccgaat cttcagagag aaacatggat actacaggat
     1921 acaggatcct accagaaagg aggattttcc ttctatttta cttctagctg ctaaccggaa
     1981 aacaagtctg aggtttcacc cagtcacacc tgtcacacta ttcgcacgca atataaactg
     2041 gaacttgttt ctcttaactg cgcccgatgg agagtccaca tacatcttat cttatagact
     2101 gaggctgatg ttccaagaaa gatctttcca aacctagaag aattagtctc caaatacaaa
     2161 aagccagatc aaggactggt ggttcacctt tcaaacccaa taatgagaac cgacttatgc
     2221 caaaaaggga gaa
//
