LOCUS       NM_001191811            1126 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus sphingosine-1-phosphate phosphatase 2 (Sgpp2),
            mRNA.
ACCESSION   NM_001191811 XM_237343
VERSION     NM_001191811.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Taguchi,Y., Allende,M.L., Mizukami,H., Cook,E.K., Gavrilova,O.,
            Tuymetova,G., Clarke,B.A., Chen,W., Olivera,A. and Proia,R.L.
  TITLE     Sphingosine-1-phosphate Phosphatase 2 Regulates Pancreatic Islet
            beta-Cell Endoplasmic Reticulum Stress and Proliferation
  JOURNAL   J Biol Chem 291 (23), 12029-12038 (2016)
   PUBMED   27059959
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Ogawa,C., Kihara,A., Gokoh,M. and Igarashi,Y.
  TITLE     Identification and characterization of a novel human
            sphingosine-1-phosphate phosphohydrolase, hSPP2
  JOURNAL   J Biol Chem 278 (2), 1268-1272 (2003)
   PUBMED   12411432
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000009.1.
            
            On Jul 17, 2010 this sequence version replaced XM_237343.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.49624.1,
                                           SRR26643294.37040.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000009.1  87211864-87211947
            85-243              JAXUCZ010000009.1  87264302-87264460
            244-423             JAXUCZ010000009.1  87294434-87294613
            424-513             JAXUCZ010000009.1  87297360-87297449
            514-1126            JAXUCZ010000009.1  87328314-87328926
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..1126
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /note="sphingosine-1-phosphate phosphatase 2"
                     /db_xref="GeneID:301543"
                     /db_xref="RGD:1565739"
     CDS             1..1065
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /note="sphingosine-1-phosphate phosphotase 2"
                     /codon_start=1
                     /product="sphingosine-1-phosphate phosphatase 2"
                     /protein_id="NP_001178740.1"
                     /db_xref="GeneID:301543"
                     /db_xref="RGD:1565739"
                     /translation="MAELLRSLRDSELVARFQRRCGLFPGQEASGEKHVVKNYFYYYL
                     FRFSAALGQEVFYITFLPFTHWNIDPYLSRRLVVIWVLVMYIGQVAKDILKWPRPSSP
                     PVVKLEKRVIAEYGMPSTHAMAATAISFTLLISTMDRYQYPFILGLIMAVVFSTLVSL
                     SRLYTGMHTVLDVLGGVLITAVLIALTYPAWTLIDSLDSASPLFPVCVIVVPFLLCYN
                     YPVSDYYSPTRADTTTVVAAGAGVTVGFWINHFFQLVSKPTPSLPVIQNIPPITTDML
                     VLGLTKFMVGIMLILLVRQLVQNLSLQVLFSWFKVVTKNKEARRRLEIEVPYKFVTYT
                     SVGICATTFVPMLHRFLGLL"
     exon            1..84
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /inference="alignment:Splign:2.1.0"
     exon            85..243
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /inference="alignment:Splign:2.1.0"
     exon            244..423
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /inference="alignment:Splign:2.1.0"
     exon            424..513
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /inference="alignment:Splign:2.1.0"
     exon            514..1126
                     /gene="Sgpp2"
                     /gene_synonym="RGD1565739"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggctgagc tgctgcggag cctgagggat tcagagctcg tggcacgctt ccagcggcgc
       61 tgcgggctct ttccagggca ggaggcttct ggtgagaagc atgttgtgaa gaattatttc
      121 tactattacc tgttccggtt ttcagctgct ttgggtcagg aggtgttcta catcacattt
      181 ctcccattca cccactggaa tatcgaccct tatttgtcca gaagattggt cgtgatatgg
      241 gttttggtga tgtacattgg ccaggtggcc aaggacatcc tgaagtggcc ccggccctcc
      301 tctcctcccg ttgtgaagct tgaaaagaga gtgattgcag aatatggaat gccatccacc
      361 catgccatgg ccgccaccgc catttctttc accctcctca tctccaccat ggacaggtac
      421 cagtaccctt tcattttagg cctgatcatg gctgtcgtgt tctctacact ggtgagtctc
      481 agcagactct acacggggat gcacacagtc ctggatgtcc tgggtggcgt tctaatcacg
      541 gcggtcctca tcgccctgac ctaccctgcc tggaccctca tcgactccct ggactccgcc
      601 agccctctct tccctgtgtg tgtcatagtt gtgccgttcc tcttgtgcta caattaccct
      661 gtgtccgact actacagccc gaccagagcg gacaccacca ccgtcgtggc tgccggcgct
      721 ggagtgaccg taggattctg gatcaaccac ttcttccagc tcgtgtccaa gcccaccccg
      781 tccctccctg tgattcagaa catccccccc attaccactg acatgctggt tttaggcctg
      841 accaaattta tggtggggat catgttgatc ctcttggttc gccaactggt gcaaaacctc
      901 tctctgcaag tgttattctc atggttcaag gtggttacta agaacaagga ggccaggcga
      961 agactagaga ttgaagtccc ttacaagttt gtcacctaca catctgttgg catctgtgcc
     1021 acaacctttg tgccaatgtt gcacaggttt ttgggattgc tctgagccca agacaagctg
     1081 ggaactagtc tgctaatgcg agatgtgaaa tgtgagaaag ctgttg
//
