LOCUS       NM_001398753            1162 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus SAGA complex associated factor 29 (Sgf29),
            transcript variant 1, mRNA.
ACCESSION   NM_001398753 XM_006230231
VERSION     NM_001398753.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Pieters,B.J., Meulenbroeks,E., Belle,R. and Mecinovic,J.
  TITLE     The Role of Electrostatic Interactions in Binding of Histone
            H3K4me2/3 to the Sgf29 Tandem Tudor Domain
  JOURNAL   PLoS One 10 (9), e0139205 (2015)
   PUBMED   26421618
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Murakami,S., Chishima,S., Uemoto,H., Sakamoto,E., Sato,T.,
            Kurabe,N., Kawasaki,Y., Shibata,T., Akiyama,H. and Tashiro,F.
  TITLE     The male-specific factor Sry harbors an oncogenic function
  JOURNAL   Oncogene 33 (23), 2978-2986 (2014)
   PUBMED   23893245
  REMARK    GeneRIF: Data show that Sry is involved in male-specific malignant
            conversion of rodent hepatocellular carcinoma via Sgf29
            upregulation.
REFERENCE   3  (bases 1 to 1162)
  AUTHORS   Lu,R. and Wang,G.G.
  TITLE     Tudor: a versatile family of histone methylation 'readers'
  JOURNAL   Trends Biochem Sci 38 (11), 546-555 (2013)
   PUBMED   24035451
  REMARK    Review article
REFERENCE   4  (bases 1 to 1162)
  AUTHORS   Schram,A.W., Baas,R., Jansen,P.W., Riss,A., Tora,L., Vermeulen,M.
            and Timmers,H.T.
  TITLE     A dual role for SAGA-associated factor 29 (SGF29) in ER stress
            survival by coordination of both histone H3 acetylation and histone
            H3 lysine-4 trimethylation
  JOURNAL   PLoS One 8 (7), e70035 (2013)
   PUBMED   23894581
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1162)
  AUTHORS   Patel,D.J. and Wang,Z.
  TITLE     Readout of epigenetic modifications
  JOURNAL   Annu Rev Biochem 82, 81-118 (2013)
   PUBMED   23642229
  REMARK    Review article
REFERENCE   6  (bases 1 to 1162)
  AUTHORS   Vermeulen,M., Eberl,H.C., Matarese,F., Marks,H., Denissov,S.,
            Butter,F., Lee,K.K., Olsen,J.V., Hyman,A.A., Stunnenberg,H.G. and
            Mann,M.
  TITLE     Quantitative interaction proteomics and genome-wide profiling of
            epigenetic histone marks and their readers
  JOURNAL   Cell 142 (6), 967-980 (2010)
   PUBMED   20850016
REFERENCE   7  (bases 1 to 1162)
  AUTHORS   Orpinell,M., Fournier,M., Riss,A., Nagy,Z., Krebs,A.R., Frontini,M.
            and Tora,L.
  TITLE     The ATAC acetyl transferase complex controls mitotic progression by
            targeting non-histone substrates
  JOURNAL   EMBO J 29 (14), 2381-2394 (2010)
   PUBMED   20562830
REFERENCE   8  (bases 1 to 1162)
  AUTHORS   Krebs,A.R., Demmers,J., Karmodiya,K., Chang,N.C., Chang,A.C. and
            Tora,L.
  TITLE     ATAC and Mediator coactivators form a stable complex and regulate a
            set of non-coding RNA genes
  JOURNAL   EMBO Rep 11 (7), 541-547 (2010)
   PUBMED   20508642
REFERENCE   9  (bases 1 to 1162)
  AUTHORS   Wang,Y.L., Faiola,F., Xu,M., Pan,S. and Martinez,E.
  TITLE     Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel
            NC2-like histone fold module that interacts with the TATA-binding
            protein
  JOURNAL   J Biol Chem 283 (49), 33808-33815 (2008)
   PUBMED   18838386
REFERENCE   10 (bases 1 to 1162)
  AUTHORS   Kurabe,N., Katagiri,K., Komiya,Y., Ito,R., Sugiyama,A., Kawasaki,Y.
            and Tashiro,F.
  TITLE     Deregulated expression of a novel component of TFTC/STAGA histone
            acetyltransferase complexes, rat SGF29, in hepatocellular
            carcinoma: possible implication for the oncogenic potential of
            c-Myc
  JOURNAL   Oncogene 26 (38), 5626-5634 (2007)
   PUBMED   17334388
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 22, 2021 this sequence version replaced XM_006230231.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ210727.1, FQ232716.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-165               JAXUCZ010000001.1  190669028-190669192
            166-262             JAXUCZ010000001.1  190691451-190691547
            263-338             JAXUCZ010000001.1  190693653-190693728
            339-411             JAXUCZ010000001.1  190694668-190694740
            412-476             JAXUCZ010000001.1  190700341-190700405
            477-606             JAXUCZ010000001.1  190701245-190701374
            607-753             JAXUCZ010000001.1  190701441-190701587
            754-789             JAXUCZ010000001.1  190701776-190701811
            790-952             JAXUCZ010000001.1  190701894-190702056
            953-1162            JAXUCZ010000001.1  190702291-190702500
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..1162
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /note="SAGA complex associated factor 29"
                     /db_xref="GeneID:293488"
                     /db_xref="RGD:1310609"
     exon            1..165
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            166..262
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     CDS             188..1069
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /note="isoform a is encoded by transcript variant 1;
                     SAGA-associated factor 29 homolog; rSGF29; coiled-coil
                     domain-containing protein 101; coiled-coil domain
                     containing 101"
                     /codon_start=1
                     /product="SAGA-associated factor 29 isoform a"
                     /protein_id="NP_001385682.1"
                     /db_xref="GeneID:293488"
                     /db_xref="RGD:1310609"
                     /translation="MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHER
                     MQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAG
                     LYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGD
                     KVAARVKAVEGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKA
                     NPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPP
                     LNVAQRYVVACKEPKKK"
     exon            263..338
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            339..411
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            412..476
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            477..606
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            607..753
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            754..789
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            790..952
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1162
                     /gene="Sgf29"
                     /gene_synonym="Ccdc101; RGD1310609"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctccgcgctc gaccgcgctc ataagagaaa cagcgtgtgt ggttcttgac gtgccgcgaa
       61 ccttcgaacg taagtgcggg actatcgtgt gaggaaacgt tccagtgatt cgctcttccc
      121 gccatcgcag ttaccagcgc gacgtgctgt ttttccctgg gctcgatgcc cttcacaggc
      181 ctatcccatg gcccttgtgt ctgctgactc tcgaattgca gagcttctca cagagctcca
      241 tcagctgatc aagcaaaccc aggaagagcg atcgagaagt gagcacaact tggtgaacat
      301 tcagaaaacc cacgagcgaa tgcagacaga gaacaagatt tctccttatt accggacaaa
      361 gctccgaggg ctctacacaa ccgccaaggc cgatgcggag gcggagtgca acatcctccg
      421 caaagcgctg gataagatag ctgagatcaa gtctctgttg gaagagaggc ggattgcggc
      481 caagatcgca ggtctctaca atgactcaga gcccccacgg aagaccatgc gcagaggggt
      541 gctgatgaca ctactgcagc agtctgccat gaccctgccc ctctggatcg ggaagcctgg
      601 tgacaagccc ccacccctct gtggagccat tccagcctca ggggactatg tggccaaacc
      661 tggagacaag gtggctgcta gggtgaaggc tgtggaaggg gatgagcagt ggatcctagc
      721 tgaagtagtc agttacagcc atgctaccaa caagtatgag gtagacgaca ttgatgaaga
      781 aggcaaagag agacataccc tgagccgacg gcgcatcatc ccactgcccc agtggaaagc
      841 taaccctgag acagaccctg aggccttatt ccagaaggag cagctggtgc tggctctata
      901 tccccagacc acctgcttct accgtgccct gatccacacc ccaccacaga ggcctcagga
      961 tgactactca gtcctgtttg aagacacctc ctatgcagat ggctattccc ctcccctcaa
     1021 tgtggcccag aggtacgtgg tggcttgtaa ggagcccaag aaaaagtgaa tcgggctggc
     1081 agacttgaat ctgccccagc caacctcatg ggagaaggca acaaaggagt tcctatgatc
     1141 caataaatac tcttccctct ca
//
