LOCUS       NM_001108875            1155 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus sarcoglycan zeta (Sgcz), mRNA.
ACCESSION   NM_001108875 XM_001066057 XM_344526
VERSION     NM_001108875.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Wheeler,M.T., Zarnegar,S. and McNally,E.M.
  TITLE     Zeta-sarcoglycan, a novel component of the sarcoglycan complex, is
            reduced in muscular dystrophy
  JOURNAL   Hum Mol Genet 11 (18), 2147-2154 (2002)
   PUBMED   12189167
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Xiao,H.S., Huang,Q.H., Zhang,F.X., Bao,L., Lu,Y.J., Guo,C.,
            Yang,L., Huang,W.J., Fu,G., Xu,S.H., Cheng,X.P., Yan,Q., Zhu,Z.D.,
            Zhang,X., Chen,Z., Han,Z.G. and Zhang,X.
  TITLE     Identification of gene expression profile of dorsal root ganglion
            in the rat peripheral axotomy model of neuropathic pain
  JOURNAL   Proc Natl Acad Sci U S A 99 (12), 8360-8365 (2002)
   PUBMED   12060780
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Apr 1, 2008 this sequence version replaced NM_001108875.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1268443.1,
                                           SRR26360190.2243250.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-258               JAXUCZ010000016.1  60363718-60363975
            259-453             JAXUCZ010000016.1  61046224-61046418
            454-555             JAXUCZ010000016.1  61258927-61259028
            556-643             JAXUCZ010000016.1  61339315-61339402
            644-766             JAXUCZ010000016.1  61401567-61401689
            767-839             JAXUCZ010000016.1  61423418-61423490
            840-963             JAXUCZ010000016.1  61435653-61435776
            964-1155            JAXUCZ010000016.1  61438441-61438632
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.1"
     gene            1..1155
                     /gene="Sgcz"
                     /note="sarcoglycan zeta"
                     /db_xref="GeneID:364605"
                     /db_xref="RGD:1307788"
     exon            1..258
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..1155
                     /gene="Sgcz"
                     /codon_start=1
                     /product="zeta-sarcoglycan"
                     /protein_id="NP_001102345.2"
                     /db_xref="GeneID:364605"
                     /db_xref="RGD:1307788"
                     /translation="MDRSTDLDIQELKMTREQYILATQQNNLPRPENAQLYPVGIYGW
                     RKRCLYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLP
                     LYVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLTVGAEAVEAQCKRFEVRASED
                     GRVLFSADEDEITIGAEKLKVTGTEGAVFGHSVETPHVRAEPSQDLRLESPTRSLIME
                     APRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNADSIRLGNLPIGSFSSSPSSSNSR
                     QTVYELCVCPNGKLYLSPAGVDSTCQSSSSICLWS"
     exon            259..453
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            454..555
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            556..643
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            644..766
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            767..839
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            840..963
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1155
                     /gene="Sgcz"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaatctttga agaagtaaaa caaagtgaat tatcattaat atttatttat ttatattatt
       61 tttaaccggt ggaggctgcg agaccacgga gaatgagact gagagaagct gccagggctt
      121 ggaggaggat aaagctgagt ttcagctgga aactaaaaga ctagatcggt tcggggagca
      181 acttggccgg ttcctctcca cttcctttag tttcgctcca tggacagatc cacggacctg
      241 gacatccagg agctcaagat gactcgagaa caatacatac tagccacaca gcagaacaac
      301 ctgccgagac ctgaaaatgc tcaactctat cctgtgggga tttatggatg gcgaaagagg
      361 tgcttatact tctttgtcct actgctgttg gttaccatga tagttaactt agccatgaca
      421 atatggatat tgaaggttat gaatttcact gtggatggta tgggaaatct gagagtcacc
      481 aagaagggaa tccgacttga aggtatatct gagtttctac tgccattgta tgtgaaagaa
      541 attcattccc gaaaggacag tccattggtc ttacagtctg acagaaacgt aacagtgaat
      601 gcaagaaacc acatggggca gctcacggga cagctgacag tcggagctga ggctgttgag
      661 gcccagtgta aaagatttga agtgagagcc agtgaagacg gcagggtgct gttttctgca
      721 gatgaagatg agatcactat tggggctgag aagctaaagg ttacagggac tgaaggagca
      781 gtatttgggc actctgtgga aacacctcac gtcagagcag agccatctca agacctcagg
      841 cttgaatcac ctaccagatc cttgataatg gaggctccac gtggggtcca ggtgagtgct
      901 gctgcaggtg acttcaaggc tacctgcagg aaggagctgc atttacagtc cacagaagga
      961 gagatttttc taaatgcaga ttcaatccgg ctgggaaatc taccaatcgg ttccttctct
     1021 tcttcaccca gctcttcaaa ttctcgacag acagtgtatg aactgtgcgt ctgccccaat
     1081 ggcaaactct acctttctcc ggctggggta gactccacct gtcagtccag tagtagcatt
     1141 tgcttgtgga gctga
//
