LOCUS       NM_153298               1083 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus sideroflexin 5 (Sfxn5), mRNA.
ACCESSION   NM_153298
VERSION     NM_153298.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1083)
  AUTHORS   Kory,N., Wyant,G.A., Prakash,G., Uit de Bos,J., Bottanelli,F.,
            Pacold,M.E., Chan,S.H., Lewis,C.A., Wang,T., Keys,H.R., Guo,Y.E.
            and Sabatini,D.M.
  TITLE     SFXN1 is a mitochondrial serine transporter required for one-carbon
            metabolism
  JOURNAL   Science 362 (6416) (2018)
   PUBMED   30442778
REFERENCE   2  (bases 1 to 1083)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   3  (bases 1 to 1083)
  AUTHORS   Miyake,S., Yamashita,T., Taniguchi,M., Tamatani,M., Sato,K. and
            Tohyama,M.
  TITLE     Identification and characterization of a novel mitochondrial
            tricarboxylate carrier
  JOURNAL   Biochem Biophys Res Commun 295 (2), 463-468 (2002)
   PUBMED   12150972
  REMARK    GeneRIF: identification and functional characterization and
            possible role in biosynthesis and bioenergetics in the brain
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB056724.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            17 bp suspected to be vector contamination from the 5' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB056724.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760396, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1083              AB056724.1         18-1100
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..1083
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /note="sideroflexin 5"
                     /db_xref="GeneID:261737"
                     /db_xref="RGD:628706"
     exon            1..145
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..1066
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /note="tricarboxylate carrier BBG-TCC; solute carrier
                     family 64 member 5"
                     /codon_start=1
                     /product="sideroflexin-5"
                     /protein_id="NP_695210.1"
                     /db_xref="GeneID:261737"
                     /db_xref="RGD:628706"
                     /translation="MADTATTASAASAAASASNASSDAPPFQLGKPRFQQTSFYGRFR
                     HFLDIIDPRTLFVTEKRLREAVQLLEDYKHGTLRPGVTNEQLWSAQKIKQAILHPDTN
                     EKIFMPFRMSGYIPFGTPIVVGLLLPNQTLASTVFWQWLNQSHNACVNYANRNATKPS
                     PASKFIQGYLGAVISAVSIAVGLNVLVQKANKFTPATRLLVQRFVPFPAVASANICNV
                     VLMRYGELEEGIDVLDADGNLVGSSKIAARHALLETALTRVVLPMPILVLPPIVMSML
                     EKTALLQARPRLLLPVHSLVCLAAFGLALPLAISLFPQMSEIETSQLEPEIARATSSR
                     TVVYNKGL"
     exon            146..214
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            215..292
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            293..319
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            320..374
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            375..400
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            401..454
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            455..511
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            512..577
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            578..668
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            669..784
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            785..870
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            871..988
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
     exon            989..1083
                     /gene="Sfxn5"
                     /gene_synonym="BBG-TCC; SLC64A5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attttaaaag ggctggagat tgcgggcgtc agtgaccatg gcggatacag cgaccacagc
       61 ctcggcggcg tccgcggcgg ccagtgcctc gaatgcctcc tccgatgctc cccctttcca
      121 gctgggcaag ccccgcttcc agcagacatc cttctacggt cgcttcaggc acttcttgga
      181 catcatcgat cctcgaacac tctttgtcac tgagaaacgt ctcagagagg ctgtgcaact
      241 actggaggat tacaagcatg gcacgctacg cccaggagtt accaatgaac agctctggag
      301 tgcacagaaa atcaaacagg ctatcctaca cccggacacc aacgagaaga tcttcatgcc
      361 tttcagaatg tcaggttaca ttcctttcgg gacgccaatt gtcgtgggac ttctcttgcc
      421 taaccagacc ctggcatcca ctgtcttctg gcagtggctg aaccagagcc ataacgcctg
      481 tgtcaactat gcaaaccgca atgctactaa gccttcacct gcatccaagt tcatccaggg
      541 ctacttggga gctgtcatca gtgctgtctc cattgctgtg ggccttaatg tgctggttca
      601 gaaagcaaac aagttcactc cagccactcg ccttctcgtg cagagatttg tacccttccc
      661 tgcagtagcc agtgccaata tctgcaacgt ggtcctgatg cggtatgggg agctagagga
      721 agggattgat gtcctggatg ctgatggcaa cctcgtgggc tcctcaaaga tcgcagccag
      781 acacgccctg ctggagacag ctctgacacg agtggttctg cctatgccca tcctggtgct
      841 ccccccgatc gtcatgtcca tgctggagaa gacagctctc ttgcaagcac gcccgcggct
      901 actcctacct gtgcatagcc tcgtgtgcct ggcagccttc ggcctggccc tgcccctggc
      961 catcagcctt ttcccgcaga tgtcagagat tgaaacctcc caattggagc ctgagatagc
     1021 ccgggctaca agcagccgga cagtggtgta caacaagggg ctgtgagtga agatagccgg
     1081 cct
//
