LOCUS       NM_001047856            1354 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus SWI5-dependent homologous recombination repair
            protein 1 (Sfr1), mRNA.
ACCESSION   NM_001047856 XM_001069953 XM_001070047 XM_215260
VERSION     NM_001047856.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Feng,Y., Singleton,D., Guo,C., Gardner,A., Pakala,S., Kumar,R.,
            Jensen,E., Zhang,J. and Khan,S.
  TITLE     DNA homologous recombination factor SFR1 physically and
            functionally interacts with estrogen receptor alpha
  JOURNAL   PLoS One 8 (7), e68075 (2013)
   PUBMED   23874500
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1354)
  AUTHORS   Yuan,J. and Chen,J.
  TITLE     The role of the human SWI5-MEI5 complex in homologous recombination
            repair
  JOURNAL   J Biol Chem 286 (11), 9888-9893 (2011)
   PUBMED   21252223
REFERENCE   3  (bases 1 to 1354)
  AUTHORS   Akamatsu,Y. and Jasin,M.
  TITLE     Role for the mammalian Swi5-Sfr1 complex in DNA strand break repair
            through homologous recombination
  JOURNAL   PLoS Genet 6 (10), e1001160 (2010)
   PUBMED   20976249
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM118556.1 and JAXUCZ010000001.1.
            
            On Mar 4, 2011 this sequence version replaced NM_001047856.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214391.1, FM118556.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-703               FM118556.1         1-703
            704-1354            JAXUCZ010000001.1  256563897-256564547
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..1354
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /note="SWI5-dependent homologous recombination repair
                     protein 1"
                     /db_xref="GeneID:294030"
                     /db_xref="RGD:1305481"
     exon            1..77
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..835
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /note="meiosis protein 5 homolog; liver
                     regeneration-related protein LRRGT00030; MEI5 meiotic
                     recombination protein homolog; MEI5 recombination repair
                     protein homolog; SWI5-dependent recombination repair 1"
                     /codon_start=1
                     /product="swi5-dependent recombination DNA repair protein
                     1 homolog"
                     /protein_id="NP_001041321.2"
                     /db_xref="GeneID:294030"
                     /db_xref="RGD:1305481"
                     /translation="MAEEEGNQEITSKMENPSDSASTSPDIPQTSENPPSPPTSPDKP
                     QTSENPPSLHSNSSGKQPMSGTLKERLKKARASSQPFCSVVKRIKVENEENDQTLSEP
                     GESSKEENCSKAQESLENKDNEPEKESSEDKNTSESKSLDTGSSSVLQKDSTEKTIKQ
                     TLKEEKAKLTRQVQEKEDLLRRLKLVKMYRIKNDVTELEDLIKKWRRCGQRLLCELQS
                     IMSEDEDEKLTLTELIDYYGIDDKLLHYNRTEEEFTGV"
     exon            78..247
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /inference="alignment:Splign:2.1.0"
     exon            248..640
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /inference="alignment:Splign:2.1.0"
     exon            641..1354
                     /gene="Sfr1"
                     /gene_synonym="LRRGT00030; Meir5; RGD1305481"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccggggcga ggtcagtgta ctccgggcgc tacgctggtt gtgtacgctg tgtctgctgt
       61 gagcatggct gaggaagaag gaaatcagga gatcacttcc aagatggaaa acccctcaga
      121 ttcagcatcc acttcacctg acattcctca gaccagtgag aatccaccat cacccccaac
      181 ctcacctgac aagcctcaga ccagtgaaaa tccaccatca ctccattcga atagttcagg
      241 aaaacaacct atgagtggga cacttaaaga aagattaaag aaagcaagag cttcatctca
      301 acctttttgt agtgtggtga agcgtattaa ggtagagaat gaagaaaatg atcagaccct
      361 ttcagaacca ggagaatctt caaaagaaga aaactgttca aaagcccaag aaagcctgga
      421 aaacaaagac aatgaacctg aaaaagagag ctcagaggat aaaaatacga gtgaatctaa
      481 gtcacttgat actgggtcat ccagtgtcct ccaaaaagat tctactgaga agactataaa
      541 gcaaactttg aaggaagaaa aagcaaaact gactaggcag gttcaagaga aggaagacct
      601 tcttcggagg ttaaagttag tcaaaatgta cagaataaag aatgacgtga ctgagttaga
      661 ggatttaata aagaagtgga ggaggtgtgg ccagcggctg ctgtgcgagt tgcagtcaat
      721 catgtccgag gatgaggacg agaagctgac cctcactgag ttgatcgact actatgggat
      781 agacgacaaa ttgctgcact ataatagaac tgaagaagag ttcacagggg tttgatactg
      841 ttgttttttt tttttttctt cttcaggctt ttgtccccct ctcttcttgg gggcctcaaa
      901 aaatgtgctc tgttcctgag ctgtacagtt agccccttta cagaatatct ttgagaatgg
      961 caatgaaaag agaaatgatt taaagggaaa aaagatctaa gctgttgtgg cttaggcgga
     1021 ggaatgttga acagttcggg atattctgac acaaaattat aaagcgaagc ttagtatttt
     1081 ggatatgttt gctaaagaaa atatttaagt ataaaaaaat taaaattgtg tttaaaacag
     1141 agtttggata attctagaaa ccaggtttaa tacattgatt tttggggcaa aaggttttat
     1201 attcagtatt aaaaagtagt ctgttgaatg tctaaacctc acgtgacata aatgtaacct
     1261 gactctctta agtttgtgga cctatcctca tatgcttaac atctgtctgc taacttagca
     1321 gctaattaaa cttacctgtg tacagttttc tcca
//
