LOCUS       NM_001191682            3879 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SFI1 centrin binding protein (Sfi1), mRNA.
ACCESSION   NM_001191682 XM_223587
VERSION     NM_001191682.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3879)
  AUTHORS   Hendrickx,A., Beullens,M., Ceulemans,H., Den Abt,T., Van Eynde,A.,
            Nicolaescu,E., Lesage,B. and Bollen,M.
  TITLE     Docking motif-guided mapping of the interactome of protein
            phosphatase-1
  JOURNAL   Chem Biol 16 (4), 365-371 (2009)
   PUBMED   19389623
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000014.1.
            
            On Jul 17, 2010 this sequence version replaced XM_223587.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2836492.1,
                                           SRR26643295.49388.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                JAXUCZ010000014.1  82272673-82272711   c
            40-162              JAXUCZ010000014.1  82266959-82267081   c
            163-333             JAXUCZ010000014.1  82264769-82264939   c
            334-405             JAXUCZ010000014.1  82263828-82263899   c
            406-516             JAXUCZ010000014.1  82259821-82259931   c
            517-611             JAXUCZ010000014.1  82257869-82257963   c
            612-729             JAXUCZ010000014.1  82252540-82252657   c
            730-832             JAXUCZ010000014.1  82246521-82246623   c
            833-989             JAXUCZ010000014.1  82241264-82241420   c
            990-1151            JAXUCZ010000014.1  82237409-82237570   c
            1152-1222           JAXUCZ010000014.1  82235275-82235345   c
            1223-1315           JAXUCZ010000014.1  82233952-82234044   c
            1316-1413           JAXUCZ010000014.1  82233256-82233353   c
            1414-1480           JAXUCZ010000014.1  82231593-82231659   c
            1481-1611           JAXUCZ010000014.1  82228354-82228484   c
            1612-1693           JAXUCZ010000014.1  82227324-82227405   c
            1694-1872           JAXUCZ010000014.1  82226913-82227091   c
            1873-1948           JAXUCZ010000014.1  82226327-82226402   c
            1949-2044           JAXUCZ010000014.1  82225762-82225857   c
            2045-2121           JAXUCZ010000014.1  82225330-82225406   c
            2122-2224           JAXUCZ010000014.1  82224302-82224404   c
            2225-2321           JAXUCZ010000014.1  82222692-82222788   c
            2322-2482           JAXUCZ010000014.1  82220628-82220788   c
            2483-2557           JAXUCZ010000014.1  82220108-82220182   c
            2558-2632           JAXUCZ010000014.1  82219448-82219522   c
            2633-2809           JAXUCZ010000014.1  82219155-82219331   c
            2810-3042           JAXUCZ010000014.1  82218641-82218873   c
            3043-3147           JAXUCZ010000014.1  82217953-82218057   c
            3148-3334           JAXUCZ010000014.1  82217642-82217828   c
            3335-3473           JAXUCZ010000014.1  82216413-82216551   c
            3474-3552           JAXUCZ010000014.1  82216231-82216309   c
            3553-3664           JAXUCZ010000014.1  82215708-82215819   c
            3665-3879           JAXUCZ010000014.1  82215423-82215637   c
FEATURES             Location/Qualifiers
     source          1..3879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..3879
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /note="SFI1 centrin binding protein"
                     /db_xref="GeneID:305467"
                     /db_xref="RGD:1560636"
     exon            1..39
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            40..162
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     CDS             140..3769
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /note="Sfi1 homolog, spindle assembly associated"
                     /codon_start=1
                     /product="protein SFI1 homolog"
                     /protein_id="NP_001178611.1"
                     /db_xref="GeneID:305467"
                     /db_xref="RGD:1560636"
                     /translation="MEKKIGFRSFRDGVVKKPCSPKALPLKKSSAFSGIQRELTRSCH
                     SSYYQSSQSWTPQRLRELRVRCVARKFLYLWMRVTFGRVTPSRARFFHEQKILRKVFG
                     EWREEWWVSQREWKLCVRADCHYRYYLYNLIFQNWKSFVYQQREMRKRFQRAEHHDMK
                     QKMRHAWKSWLIYMVARRTKFRMKSTALEFRRRSVLCFWWNKWRWRLGRVHAEQALHA
                     AAVKHRALSLQLQAWLRWQEQLLISQRERRKVATAVRHHQRWQKQRTLKAWLKYLRIC
                     RVKRWQNEMAVQFHRITVLQIHFCDWQWAWEWRQSLSAHQALVAKLARKMVLRRAFAH
                     WKHYMLLQEEEAAQREAAAEHHQHCLLHSCFRAFKDNVTRARLKRMRKSLAHQLRDTT
                     LLHRFWNLWQSRVEQREERVQPPSLLAAQSHYRMTVLRKCVRVWLQYVHKRRCLQSLQ
                     ARALGHFQQRALPAAFYTWYRVWRWHQQRRTLHTRAVRFHREALEKQVFALWRQKVSQ
                     HREIRLAERMAMLQAEQQLLRRFWFVWHQRAAACHQERQRQAMAIAHHHSGLLRRAFC
                     IWRESTQGFRMERMGRAQASHFHSVRLLCWAWSKWREGLALRMEEQQKLKRAALHSQR
                     TLLHRALQKWLVYQDRMRSVLQEVAARERQHNRQLLWWVLHRWRENTMARLDGAKKTS
                     QARVHYNRTLCSKVLVQWREVTSVKIYYRQKEAAALREARKALDRGRLRTWLQRWQVC
                     RQREAQQTFRLQQAAQHHRRQLLAGAMARWKAYHLCCVRKKFLQRQAAQLLAQRLGRA
                     CFCQWRKQLAVRKQEQWGTARALWFWAFSLQAKVWAAWLGFVLEKRRKKARLEQAMQA
                     YHQQLLQEGATRLLRFTAGMKALRQQLQAQQQVQAAHSLHCAVRHCAELWKKKVLGPD
                     KTSQPPAPIAFSRRVTFKDFSLSGLAAEAGDAPLSQGVLGSLAVAAGEPFIPELNEAR
                     PSRKQPRRPSFLLERVQSQRSPERCTLGEQQLQKTPEKGQSMAPPGGSSLTRPFLPVV
                     RPNVSGPKLPPTASPGLELLPPSSFMPHGVRDAARVSTKPSISGPQPWGCPSLTRDPD
                     PHLLLPGDSTSTRTGPGYGSETTGHTELEAELEGIQQQLQHYQTTKQNLWSCQRQANS
                     LRRWLELSQEEPSCEDLHLEEQVKTELEEVELQIQQLAKELEAQRQPVGTCIARVRAL
                     RRALC"
     exon            163..333
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            334..405
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            406..516
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            517..611
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            612..729
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            730..832
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            833..989
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1151
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1222
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1315
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1413
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1480
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1611
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1693
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1694..1872
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1873..1948
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            1949..2044
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2121
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2122..2224
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2225..2321
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2322..2482
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2483..2557
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2632
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2633..2809
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            2810..3042
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3043..3147
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3148..3334
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3335..3473
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3474..3552
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3553..3664
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
     exon            3665..3879
                     /gene="Sfi1"
                     /gene_synonym="RGD1560636"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caacctctct ggggtctgct gaggagtcac ctctctcagt tataagagga ggataaaagg
       61 ctctggttca tcaataatct agtcacagaa ataacatatc aaccattggg tgagtgtcca
      121 ccaacaggaa ttacagagaa tggagaagaa gattggcttc aggtctttta gggatggcgt
      181 ggttaagaaa ccttgttctc caaaggcact gcccctcaaa aagtcttctg ccttctctgg
      241 gatccagagg gagttaacta gaagctgcca ctcctcgtac tatcaatcct cacaaagttg
      301 gactccacag agattacgag aactgcgtgt caggtgtgtg gccagaaagt tcctatattt
      361 gtggatgcga gtgacctttg gaagagtgac tccttccaga gccaggtttt tccatgagca
      421 gaaaatacta cggaaggtct ttggagagtg gagggaagaa tggtgggtct cccagaggga
      481 gtggaaactc tgcgttcgag ctgactgtca ctacagatac tacttgtaca acctgatttt
      541 ccagaactgg aagtcctttg tgtaccagca acgggagatg aggaagaggt tccaaagagc
      601 cgagcatcat gatatgaaac agaagatgcg ccacgcctgg aagtcctggt taatatacat
      661 ggttgctcgt aggaccaaat ttcgcatgaa gagcactgct ctagagtttc ggaggcggag
      721 tgtcttatgt ttctggtgga acaagtggag gtggcgacta ggacgagtcc acgcagagca
      781 agctctccac gcagcggccg tgaagcacag ggccctgagc ctccagctgc aggcttggct
      841 gcgatggcaa gaacagcttc tcattagcca gcgagagaga aggaaggtgg ccactgctgt
      901 gagacaccat cagcgctggc agaagcagag aactttgaag gcttggctta aatacctccg
      961 tatctgcagg gtgaagagat ggcagaatga gatggctgta cagttccacc gcattactgt
     1021 gctccagata catttctgtg actggcagtg ggcctgggag tggaggcaga gcttgtctgc
     1081 ccaccaggcc ctggtggcga agctggccag gaagatggtc ctgcgaaggg cctttgccca
     1141 ctggaagcac tacatgctgc tacaggaaga agaggctgcc cagcgtgagg cagcggcaga
     1201 gcaccaccaa cactgcctgc tgcattcttg ttttagagcc ttcaaagaca acgtgacccg
     1261 ggcccgacta aagcgaatga gaaagagcct tgctcaccag ctgcgcgata ctacactgct
     1321 ccacaggttc tggaacctct ggcagtctcg agttgaacag agggaggaga gggtacagcc
     1381 cccctcactg cttgcagccc agagccacta caggatgaca gtcctacgca agtgtgtcag
     1441 ggtgtggcta cagtatgtgc acaagagaag atgcctgcag tcactgcagg ccagagcact
     1501 cggtcatttt cagcagcgag cactgcctgc tgccttctac acgtggtaca gagtctggcg
     1561 atggcaccag cagagacgga ccctccacac cagagcagtg cgttttcaca gagaggcatt
     1621 agagaagcaa gtatttgctc tctggaggca gaaggtgtct cagcatcgag aaatccgctt
     1681 ggctgagaga atggctatgc tgcaggcaga gcagcagctc ttgcgtaggt tctggttcgt
     1741 gtggcaccag cgggcagcgg cgtgtcacca ggagcgacag cggcaagcca tggccattgc
     1801 ccaccaccac agcgggctgc tcaggagggc tttctgcatc tggagggaaa gcacccaagg
     1861 atttaggatg gagaggatgg gcagggcaca ggcttcacac ttccactcag tacggctcct
     1921 gtgttgggcc tggagcaagt ggagggaggg cctagctctg aggatggagg agcagcaaaa
     1981 gctgaagcgt gcagccctgc acagccagcg caccctgctc cacagggctc tgcagaagtg
     2041 gctggtttac caggacagga tgaggagtgt tcttcaggag gttgcagcca gggaaagaca
     2101 gcacaacagg cagctgctgt ggtgggtgtt acatcgctgg agagaaaaca ccatggcccg
     2161 tttggatggg gccaaaaaaa cctctcaagc tagagtccac tacaacagga ctctgtgctc
     2221 caaggtcctg gtccagtggc gggaggttac atcagtgaag atatattacc gacaaaagga
     2281 ggcagctgcc ctcagggagg cccggaaagc actggacagg ggtcgtctcc ggacctggct
     2341 tcagcggtgg caggtctgca ggcagaggga ggctcagcag acattccggc tgcaacaggc
     2401 ggctcagcat caccgccggc agctgctagc gggagcaatg gccaggtgga aggcgtacca
     2461 tctgtgttgt gtcaggaaaa agtttctgca gaggcaagct gcccagctcc tggcacagag
     2521 actcggtcgg gcctgtttct gccagtggag gaagcagctg gcagtcagga agcaagaaca
     2581 gtggggcaca gccagggccc tgtggttctg ggccttctcc ctacaggcaa aggtgtgggc
     2641 tgcatggctg ggcttcgtac ttgagaagag gaggaagaag gcacggctgg agcaggctat
     2701 gcaagcctac caccagcagc tcctgcagga gggggccacg cggcttctgc gcttcacggc
     2761 tggcatgaag gcgctccggc aacagctcca ggcccagcag caggtccagg cagcccacag
     2821 cctccactgt gcagtccgcc actgtgctga gctctggaag aagaaggtac tcggtccaga
     2881 caagacttct caacctccag cacccatcgc attcagcaga agagtgacgt ttaaggattt
     2941 ctctctctct ggacttgctg ctgaggctgg agatgctccc ctgtctcagg gcgtcctggg
     3001 aagtttggca gtagctgctg gagagccctt catcccagaa ctcaatgagg cccgcccatc
     3061 acggaaacag cctcgacgtc cgtccttcct gctggagcgt gtgcagagcc agaggtcccc
     3121 agagcggtgc accctcgggg agcagcagtt acagaagacc ccagaaaagg gtcagagtat
     3181 ggctccacca ggaggctctt ccctgacgcg acccttccta ccagtggtgc ggccaaatgt
     3241 ttctggtccg aagctgcctc ctacagcaag cccaggcctg gagctgttgc ctccttcctc
     3301 attcatgccc catggggtga gggacgctgc cagggtgtca acaaagccca gcatctctgg
     3361 acctcaacct tggggttgcc catccttaac cagggaccct gatccccatc ttctgctccc
     3421 tggagattcc acaagcacca ggactgggcc tggttatggc tctgagacta caggccacac
     3481 cgagcttgag gccgagttgg agggcatcca gcagcagtta caacactacc aaaccaccaa
     3541 gcagaacctt tggtcatgcc agcgacaagc caacagcctg cgtaggtggc tggagctaag
     3601 ccaggaggag ccaagctgtg aggacctcca tctagaagag caggtgaaaa cagaactgga
     3661 ggaggtggaa ctacagatcc agcagctggc taaggagctc gaggcccagc ggcagcctgt
     3721 cggtacatgc attgctcgtg ttcgggccct gagacgggct ctgtgctagt gggcttgccc
     3781 ctagggtaag gatacccaac cctcaacaac aaaacacaaa gctacaatag ttttttgttt
     3841 aatctcaaaa tgtcttgcaa ttaaatgaat tactgttca
//
