LOCUS       NM_001107550            4207 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus seizure related 6 homolog like 2 (Sez6l2), mRNA.
ACCESSION   NM_001107550 XM_001078063 XM_219339
VERSION     NM_001107550.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4207)
  AUTHORS   Miyazaki,T., Hashimoto,K., Uda,A., Sakagami,H., Nakamura,Y.,
            Saito,S.Y., Nishi,M., Kume,H., Tohgo,A., Kaneko,I., Kondo,H.,
            Fukunaga,K., Kano,M., Watanabe,M. and Takeshima,H.
  TITLE     Disturbance of cerebellar synaptic maturation in mutant mice
            lacking BSRPs, a novel brain-specific receptor-like protein family
  JOURNAL   FEBS Lett 580 (17), 4057-4064 (2006)
   PUBMED   16814779
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On Oct 11, 2007 this sequence version replaced NM_001107550.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.5289.1,
                                           SRR26643289.2947.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-975               JAXUCZ010000001.1  190987647-190988621
            976-1107            JAXUCZ010000001.1  190989547-190989678
            1108-1407           JAXUCZ010000001.1  190990258-190990557
            1408-1547           JAXUCZ010000001.1  190990868-190991007
            1548-1749           JAXUCZ010000001.1  190991200-190991401
            1750-1935           JAXUCZ010000001.1  190995730-190995915
            1936-2104           JAXUCZ010000001.1  190996499-190996667
            2105-2268           JAXUCZ010000001.1  190997224-190997387
            2269-2469           JAXUCZ010000001.1  190999242-190999442
            2470-2608           JAXUCZ010000001.1  190999855-190999993
            2609-2805           JAXUCZ010000001.1  191000742-191000938
            2806-3000           JAXUCZ010000001.1  191001040-191001234
            3001-3192           JAXUCZ010000001.1  191004461-191004652
            3193-3384           JAXUCZ010000001.1  191004749-191004940
            3385-3423           JAXUCZ010000001.1  191005433-191005471
            3424-3541           JAXUCZ010000001.1  191005653-191005770
            3542-3638           JAXUCZ010000001.1  191005883-191005979
            3639-4207           JAXUCZ010000001.1  191007422-191007990
FEATURES             Location/Qualifiers
     source          1..4207
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..4207
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /note="seizure related 6 homolog like 2"
                     /db_xref="GeneID:308988"
                     /db_xref="RGD:1565281"
     exon            1..975
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     CDS             897..3668
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /note="seizure 6-like protein 2"
                     /codon_start=1
                     /product="seizure 6-like protein 2 precursor"
                     /protein_id="NP_001101020.1"
                     /db_xref="GeneID:308988"
                     /db_xref="RGD:1565281"
                     /translation="MGTPKAQHPPPSQLLFLILLSCAWIEGLPLKEDEMMPEPGSETP
                     TVASEDLAELLHGALLRKGPEIGFLPGSDPDPTLATPPAGQTLAAPSLPRATEPGTGP
                     LTTAVTPKGVRGSGPTAPELLTPPPGTTAPPPPGPASPVPPLRPEGGEEETTTTIITT
                     TTVTTTVTSPVLCNNNISEGEGFVESPDLGSTASRSVELLDCTYSIHVYPGYGIEIQV
                     QTLNLSQEEELLVLAGGGSPGLAPRLLANSSMLGEGQVLRSPTNRLLLHFQSPRVPRG
                     NGFRIHYQAYLLSCGFPPRPAHGDVSVTDLHPGGTATFHCDSGYQLQGEETLICLNGT
                     RPAWTGEPPSCTASCGGTIHNATLGRIVSPEPGGAAGPNLTCRWVIEAAEGRRLHLHF
                     ERVSLDEDNDRLMVRSGGSPLSPVIYDSDMDDVPERGLISDAQSLYVELLSETPANPL
                     LLSLRFEAFEEDRCFPPFLAHGNVTTTDPEYRPGALATFSCLPGYALEPPGPPNAIEC
                     VDPTEPHWNDTEPACKAMCGGELSEPAGVVLSPDWPQSYSPGQDCVWGLHVQEEKRIL
                     LQVEILNVREGDMLTLFDGDGPSARVLAQLRGPQPRRRLLSSGPDLTLQFQAPPGPPN
                     PGLGQGFVLHFKEVPRNDTCPELPPPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSD
                     ILTCQWDLSWSAAPPACQKIMTCADPGEITNGHRTASDAGFPVGSHVQYRCLPGYSLE
                     GAAVLTCYSRDTGTPKWSDRVPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFF
                     CYEGFELIGEVTITCVPGHPSQWTSQPPLCKVAYEELLDNRKLEVTQTTDPSRQLEGG
                     NLALAILLPLGLVIVLGTGVYIYYTKLQGKSLFGFSGSHSYSPITVESDFSNPLYEAG
                     DTREYEVSI"
     exon            976..1107
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1407
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1547
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1749
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1935
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2104
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            2105..2268
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            2269..2469
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            2470..2608
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            2609..2805
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            2806..3000
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3001..3192
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3193..3384
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3385..3423
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3424..3541
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3542..3638
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
     exon            3639..4207
                     /gene="Sez6l2"
                     /gene_synonym="RGD1565281"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggatactcc cctttttcct gcgagagggg cgagcccatc ccatctgagc ttttgtaaag
       61 ggcatagtga aggccctcgg ggaggtccgg gtgtggacag aggacgtact ggacaggcca
      121 gcaagacgtg aaccaagctg tgcccactct cagcacctta ggaagaccag gtgcagatac
      181 cagatgttct ggaatggcgc cgggaggaaa cctaattact actgggacca gagtttcctt
      241 ccgctcccct agaggcctcg gagtacagat tacggtcctg gctcgggatc cctccttcct
      301 ccatctgcac ttcctcctcc tcctccctca tcagagaata aatcccaggc ccctcccttc
      361 gcccgtcccc aggatctgac gtgggcttga cacctttctc agcttctctc tcccgcagct
      421 ccagtggccg agcttcagct tccctggttc cgcaacccct tccctcttcc tctccgtgat
      481 aagccccggt tgaaccctat aaggaccctc tggatcttca agtccaccct ggacccccgg
      541 aagctgcctt ttccctccca cttcccctgg ctagctagct atcatcccga tgggcccaag
      601 cgcccgaaca aggggataac cttcggccct ctcggcccca ccccccgcag cgggagccgc
      661 gccccccttt gccatagatc gcagagcaaa ggataaagat taagcaaaag ggggcggact
      721 ccaagcaacc cctaggccaa ttctgctcct ccatcccaaa ggaagaaata ttgtcttcct
      781 ttgctgaccc ttagcaggaa agcaaaatta aaggaaaaga taaaaggacg cgaagggaaa
      841 gtgacagcta gattattcag aagagccacg gaggagagaa attagggtga gtcgccatgg
      901 ggactcccaa ggcccagcac ccgccgcctt cccagctgtt gttcctaatt ctgctgagct
      961 gtgcctggat tgagggtttg cccctgaagg aggatgagat gatgccagag cctggaagtg
     1021 agactcccac agtggcctct gaggacctgg ctgagctgct ccatggggct ttgctgcgga
     1081 agggcccaga gatcggcttc ttgccgggat ctgacccaga ccccacacta gccacccctc
     1141 cagccggcca gactcttgca gcaccctccc tgccacgtgc cactgagccg gggacagggc
     1201 ctctgacgac agctgtcacc cctaaagggg tcagagggtc aggccccacc gcaccagagc
     1261 tgctgacccc accccctgga actacagccc cgcccccacc tggccccgcc tccccggtcc
     1321 cacccctcag gcccgaggga ggagaggaag aaaccaccac caccatcatc accacaacaa
     1381 ctgttaccac tactgtcacc agcccagttc tgtgcaataa caacatctcc gagggcgaag
     1441 ggtttgtgga atctccagac ttggggagca ctgccagccg ctctgtggag ctcctagatt
     1501 gcacctacag catccacgtc taccctggtt atggcattga gattcaggtg cagacactca
     1561 acctctctca ggaggaggag ctcctggtgc tggctggtgg gggctctcca ggcctggccc
     1621 ccagactcct ggctaattcc tccatgctgg gagaaggaca agtgcttcgg agtccaacaa
     1681 accggctgct cctgcatttc cagagtcctc gagtcccaag gggcaatggc ttcaggattc
     1741 actatcaggc ataccttctg agctgtggct tcccaccccg gccagcccat ggggacgtga
     1801 gtgtgacaga cttgcatcct gggggcaccg ccaccttcca ctgtgactca ggataccagc
     1861 tgcagggtga ggagaccctc atctgcctca atggcacccg gccagcctgg actggtgaac
     1921 cccctagctg cacagcatct tgtggtggta ccatccacaa tgccacactg ggtcgcattg
     1981 tgtcccctga gcctggggga gctgcagggc ccaacctcac ctgtcgctgg gtcatcgaag
     2041 cagctgaggg acggcggcta cacctgcact ttgagagagt ctcactggat gaggacaatg
     2101 accggctgat ggtgcgctca gggggaagcc ccctgtcccc tgtgatttat gactctgaca
     2161 tggatgatgt ccccgagcgt ggcctcatca gtgacgccca gtccctctac gtagaactgc
     2221 tttcagagac gccagccaac cccctgctgc tcagcctccg gtttgaagcc tttgaggagg
     2281 atcgctgctt cccgcctttc ctggcacatg gcaatgtgac caccacagat cctgagtacc
     2341 gcccaggggc actggccacc ttctcatgcc tcccaggata tgctctggag ccaccagggc
     2401 cccccaatgc tattgaatgt gtggatccca ctgaacccca ctggaatgac acagagccag
     2461 cctgcaaggc catgtgtgga ggagagctgt ctgagccagc tggtgtggta ctctctcccg
     2521 actggcccca gagttacagt cctggccaag actgcgtgtg gggcctgcac gtccaggaag
     2581 agaagcgcat cttgctccaa gttgaaatct tgaatgttcg cgaaggggat atgctaacac
     2641 tgttcgacgg tgatggcccg agcgctcgag tcctggccca gctgcggggg cctcagccac
     2701 gccgccgcct cctctcctct ggacctgatc tcactctgca gtttcaggca ccccctgggc
     2761 ctccaaatcc gggcctaggc cagggtttcg tgttacactt caaagaggtc ccgcggaacg
     2821 atacgtgccc ggaactgcca cctcctgagt ggggctggag gacagcatcc cacggggacc
     2881 ttatccgggg caccgtgctc acttaccaat gcgagcctgg ctacgaacta ctgggatcag
     2941 acatcctcac ttgccaatgg gacctgtcct ggagcgcggc gccacctgcc tgccaaaaga
     3001 tcatgacttg tgctgaccct ggtgagatca ctaatggcca ccggactgcc tcagatgctg
     3061 gttttcctgt gggctcccat gtccagtatc gatgtctgcc aggatacagc ctagaggggg
     3121 cagctgtgct cacctgctac agccgggaca cgggcacacc caagtggagc gatcgggtcc
     3181 ccaaatgcgc cttaaagtac gagccatgcc tgaaccccgg cgttcctgag aatggctacc
     3241 agacattgta caagcatcat taccaagcgg gggagtcact acgcttcttc tgctatgagg
     3301 gctttgagct catcggcgag gtcaccatca cctgtgtacc tgggcacccc tcccagtgga
     3361 caagccagcc cccactctgc aaagtggcct atgaggaact cctggacaac cgaaaactgg
     3421 aagtgaccca gactacagat ccatcacggc agctggaggg tgggaatctc gctttggcta
     3481 tcctgttgcc cctgggcttg gtcattgtcc ttggcactgg tgtttacata tactacacta
     3541 agctacaagg aaaatccctc tttggcttct cgggctctca ctcctacagt cccattaccg
     3601 tggagtcaga cttcagcaac ccactgtatg aagctgggga tacaagggaa tatgaagttt
     3661 ccatctaagt ctaagtctgc aggacccagg acctccccat tctctcatca ttctgggcag
     3721 tgaggagcaa aggatctggt ctctggctcc cctacccccc tgctgtgtaa atagtctccc
     3781 caccccatga gggggctttg atggccctgg agaccctaca gtaaataaac cagcatcctg
     3841 ccgcccaaag ccgcctcttc ttagttgcca aataaggggc cttccacccc ctatcctact
     3901 gatttctgga cccacggaag ggaactcagc cccttgcaac tcttggggct cctccaggcc
     3961 agggccctac tcaagaactg tcccccagca ttactgtccc catggccatg aaggctccct
     4021 acccccaaat gcctgactgc tgctgggcct tggagggtga gaaggatgaa gggagagatg
     4081 ggctgaaacc catcccttcc ccgtgtctcc ccacccactc tctctccaca tttatttgct
     4141 tctgagttct tgtttttgag caataaacgg aaagtcacca cttgtaactg agctggtgag
     4201 tctggaa
//
