LOCUS       NM_001399979            2667 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Set nuclear proto-oncogene (Set), transcript
            variant 1, mRNA.
ACCESSION   NM_001399979
VERSION     NM_001399979.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Milochau,A., Lagree,V., Benassy,M.N., Chaignepain,S., Papin,J.,
            Garcia-Arcos,I., Lajoix,A., Monterrat,C., Coudert,L.,
            Schmitter,J.M., Ochoa,B. and Lang,J.
  TITLE     Synaptotagmin 11 interacts with components of the RNA-induced
            silencing complex RISC in clonal pancreatic beta-cells
  JOURNAL   FEBS Lett 588 (14), 2217-2222 (2014)
   PUBMED   24882364
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158573.1, SRR26643288.12959.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-219               JAXUCZ010000003.1  33732863-33733081
            220-277             JAXUCZ010000003.1  33739341-33739398
            278-420             JAXUCZ010000003.1  33739886-33740028
            421-524             JAXUCZ010000003.1  33740247-33740350
            525-638             JAXUCZ010000003.1  33740444-33740557
            639-809             JAXUCZ010000003.1  33740913-33741083
            810-956             JAXUCZ010000003.1  33741165-33741311
            957-2667            JAXUCZ010000003.1  33741723-33743433
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2667
                     /gene="Set"
                     /note="Set nuclear proto-oncogene"
                     /db_xref="GeneID:120101889"
                     /db_xref="RGD:41368318"
     exon            1..219
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..980
                     /gene="Set"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein SET"
                     /codon_start=1
                     /product="protein SET isoform 1"
                     /protein_id="NP_001386908.1"
                     /db_xref="GeneID:120101889"
                     /db_xref="RGD:41368318"
                     /translation="MAPKRQSAILPQPKKPRPVAAPKLEDKSASPGLPKGEKEQQEAI
                     EHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP
                     QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNES
                     GDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGE
                     VIKDDIWPNPLQYYLVPDMDDEEGEAEDDDDDDEEEEGLEDIDEEGDEDEGEEDDDED
                     EGEEGEEDEGEDD"
     exon            220..277
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            278..420
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            421..524
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            525..638
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            639..809
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            810..956
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
     exon            957..2667
                     /gene="Set"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggccgact taaatctccg gcacctgagg ccgcctcagt tcctgcgagt ttcctcctac
       61 tgtgaacatc agtgctctgg cctccgtctc ctggccacct ccctcgcgcc atggccccga
      121 agcggcaatc tgcgatcctg cctcagccca agaaacccag acccgttgct gccccgaagc
      181 tggaggacaa gtcggcctct cccggcctgc cgaagggaga aaaagaacag caagaagcaa
      241 ttgaacatat tgatgaagta caaaatgaaa tagacaggct taatgaacaa gccagtgagg
      301 aaattttgaa agtagaacaa aaatataaca aactccgcca accatttttt cagaagaggt
      361 cagaattgat cgccaaaatc ccaaattttt gggtaacaac atttgtcaac catccacaag
      421 tgtctgcact gcttggggag gaagacgagg aggccctgca ctatttgacc agagttgaag
      481 tgacagaatt tgaagacatt aaatcaggtt acagaataga tttttatttt gatgaaaatc
      541 cttactttga aaataaagtt ctctccaaag aatttcatct gaatgagagc ggtgacccat
      601 cttcaaagtc caccgaaatc aaatggaaat ctggaaagga tttgacaaaa cgctcaagtc
      661 aaacgcagaa taaggccagc aggaagaggc agcacgaaga gccagagagc ttctttacct
      721 ggtttactga ccattcagac gcaggtgctg acgagttagg agaggtcatc aaagatgata
      781 tttggccaaa tcctttgcag tactatttgg ttcccgatat ggatgatgaa gaaggagagg
      841 cagaggatga cgatgatgac gatgaagagg aggaagggtt ggaagacatt gatgaagaag
      901 gagacgagga cgaaggtgaa gaagacgatg atgaggatga aggggaggaa ggagaggagg
      961 atgaaggcga ggatgactag cacagaagac cgatggatcc aaccttcttt ttcattttct
     1021 ttttattttt taaatttccc cagtccctgg gagcgagttg cagtcctttc ctccctgtcc
     1081 ctctgtgctc agccgccctg tttttgaggt ctcaacatca tggttctcaa ctaatttggg
     1141 gggaaaatat cttgagcaaa atacaacagg aaaagaatct tcacgtttct gttctaaatt
     1201 catttttatc cttgtctcaa actgtggatt caacaccacc accatgctct gtgggaagaa
     1261 agaaaagccc tccagttccc ttggctctgc tggaggctgg agggtgctag gcccctgtgt
     1321 agtagtgcat agaattctag ctttttcttt tctctgtata ttgggctcag agattacact
     1381 gtgtctctat gtgaatacag acagttagca tttaccaaca tggatctgtc tactttctct
     1441 tgtttaataa aaaggaaaaa aaaagaaaaa ggggggggat agacagtgag caagggtggg
     1501 atcgaggtgt cgggggggta tgtgggcatc tgacaacatg gcttctcctt tggcatgttt
     1561 cattgtgacg tttaacagac atccttgccg tttaaggtga cacttaaata aaataaaact
     1621 ctcctgatga agacttgagc ccgccactca cgggagaacc agcagacgct gtaggggttt
     1681 atttggagtt ggcattctct gttgtaactt tcatctttag tttttttctt tccttttttt
     1741 tctctttttt ttttttctct ttttttactc tttttcggtt ttcactggaa ggaaaaagat
     1801 gctcatttta aatgttgccg tgtacaagtt gctttgttac aataaaatca atgtgtacac
     1861 aaaggacctg atgcttttct gtcagaagag atgctccaca gaccttccaa gtttgacctg
     1921 cataatgaca ccatgtcaaa ctttgtctcc ctaacttcgt attttttata cgcactttgc
     1981 aggatgacct cagggctgtg cagattgagt taaagggatt tgaatcatgt cttaacgtct
     2041 ccgtaactga gtgggcacag cttgctgctg tggactcgta cccttggttt ttatctcaca
     2101 tttggcattt ttttaaaaaa aaaaaaataa gggcctttag ttacctggat ctcatggcag
     2161 cacctgctcc cactgtcact gacctgatac tctaatgcca tctacaaagg acaactgctg
     2221 gtgtgaactg gcagtgtgaa ctgaccgaga aggtgggctg tctgtcaggg tgagcagtcg
     2281 gtgaggtggg ctgtcacggg tatgtagcag aaactctcag acgtgactct gacctgggtg
     2341 gatgaagagc tgtctgccca gcgccattgt gcagagaaca atgtttcggg aagcgacctg
     2401 atgcataagc tttttaatgc tgtaaaatag agctaaaatg aaatgccact ttttcagaga
     2461 tgattaatgg acagcctggt caaattcaaa gctttctgat gtataaaact ttataaatgg
     2521 aactactcca tcaataggca aagtgtaacc aaaatctgtc tagatggata gtgtgtaatt
     2581 tctgcacagg actctgttta gtaaatacat cactgtatac gtcaggaatc ttgctccaat
     2641 aaaggaacat aaagattttt ttttgga
//
