LOCUS       NM_001354555            4862 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus serine rich and transmembrane domain containing 2
            (Sertm2), transcript variant 1, mRNA.
ACCESSION   NM_001354555 NR_126572 XR_349733 XR_362537
VERSION     NM_001354555.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4862)
  AUTHORS   Coon,S.L., Munson,P.J., Cherukuri,P.F., Sugden,D., Rath,M.F.,
            Moller,M., Clokie,S.J., Fu,C., Olanich,M.E., Rangel,Z., Werner,T.,
            Mullikin,J.C. and Klein,D.C.
  CONSRTM   NISC Comparative Sequencing Program
  TITLE     Circadian changes in long noncoding RNAs in the pineal gland
  JOURNAL   Proc Natl Acad Sci U S A 109 (33), 13319-13324 (2012)
   PUBMED   22864914
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            Summary: This gene shows differential day versus night expression
            in the pineal gland. The encoded protein is highly conserved across
            organisms, serine-rich and may contain a transmembrane domain. The
            full-length structure of the resulting transcript variants is not
            known. [provided by RefSeq, Aug 2017].
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.3207362.1,
                                           SRR26360172.1934260.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840114, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-322               JAXUCZ010000021.1  112524451-112524772
            323-418             JAXUCZ010000021.1  112524935-112525030
            419-4862            JAXUCZ010000021.1  112532031-112536474
FEATURES             Location/Qualifiers
     source          1..4862
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq34"
     gene            1..4862
                     /gene="Sertm2"
                     /gene_synonym="Lnc016; lncSN016"
                     /note="serine rich and transmembrane domain containing 2"
                     /db_xref="GeneID:102554851"
                     /db_xref="RGD:7673510"
     exon            1..322
                     /gene="Sertm2"
                     /gene_synonym="Lnc016; lncSN016"
                     /inference="alignment:Splign:2.1.0"
     exon            323..418
                     /gene="Sertm2"
                     /gene_synonym="Lnc016; lncSN016"
                     /inference="alignment:Splign:2.1.0"
     exon            419..4862
                     /gene="Sertm2"
                     /gene_synonym="Lnc016; lncSN016"
                     /inference="alignment:Splign:2.1.0"
     CDS             1163..1432
                     /gene="Sertm2"
                     /gene_synonym="Lnc016; lncSN016"
                     /note="long non-coding RNA SN016; long non-coding RNA 016"
                     /codon_start=1
                     /product="serine-rich and transmembrane domain-containing
                     2"
                     /protein_id="NP_001341484.1"
                     /db_xref="GeneID:102554851"
                     /db_xref="RGD:7673510"
                     /translation="MTEVHFKYHGNLTGRAHFPTLATEVDTTADKYSNLYMYVGLFLS
                     LLAILLILLFTMLLRLKHVISPITESTESVPQFTDVEMQSRIPTP"
ORIGIN      
        1 ttataaagag agcaagccgt agataatctt accgattcgg tgaaggaggc ttgaaggggt
       61 taaagtggaa ggcttgtaca aactttgctc tcttatctcc tccctccctc tggggcttca
      121 ctctggctca ggcagagctg agctgagtgg aatcgctacc tttcctgcat tcgctcaact
      181 gttgccagca aaggaggaac cagggactta actaattcag gctgcttcca ttcaaatgtt
      241 ccaaaagggc atctacacag ccagagacct cgcagtgctc tttgcagctt agaagaggca
      301 tcagaaactg cattctggag ccatactcca gagatgctct gaacaagttg tctgccggtg
      361 caagcttcaa aggggatatt taaatcgcca accgtactcg ttctgtgact caggaaagga
      421 aaattaatct gttgaagatt cctaacagtc gaattctctg agccctggcc agttgtcagc
      481 atctctgaga cctcctcctc ctcctcctaa gtatcagagg gtgtgacaac accttccctg
      541 ctggatggcc acaaagctgt agaaggctca tttcctgtat tcttatatcc ttcaagctgg
      601 gagtgtggca ggaacgttac agtctcagac cttaggaaag actgacaaat tcaggcataa
      661 caggggaaaa ctcagttaaa atgcaccaga gacatccaaa acctttagca aacagtctcc
      721 cagaagaacc caattaaacc tccaccatta gtctgcagat ctaggtgagc tttagataaa
      781 aaggagcctt ttatcctttt agaaaataaa aagcaaaatg aagattctta tctccatacc
      841 agtattataa agtagtttta ccatatttat tttccccagt gtgagaaggg aatatagatt
      901 tatttattta tatattcatc tatttactta gttaaactta ctaagaagtt ctgataaagc
      961 aattatggaa agggctgctt gctaaaggga ggggaagaac aacaattggc aacttagaag
     1021 accacgtcct tcttgcttac acactactga ttttgtcctg tagcagattg ttggaacaat
     1081 actttcccag acaagctaag ggactgtgga atgcctcgag ggcaatagaa atcaaataga
     1141 agcaaatatc aagtcttgag tgatgacgga ggtacatttt aagtatcatg gaaatctcac
     1201 gggacgggct cattttccca ctctggcaac agaggttgac accactgcag acaagtattc
     1261 caacctgtac atgtatgtag gattattcct gagtctcctg gccattcttc tcatcctgct
     1321 cttcaccatg cttcttcggc tcaaacatgt catctcaccc atcactgaga gcaccgaaag
     1381 tgttcctcag ttcacagatg tagagatgca aagccgaatt cccactcctt aaagtcggga
     1441 tgatggtgag actcggcaaa tatgagcaga ccctggcatg ctgacaccta gggaggcttc
     1501 ctttctcaca tgagacttcc cacataacaa caagctgctt gtgtttgatg ctgtcatcct
     1561 gcctcttcac tgtgcttatg agacctctaa gaggcttaag agtcattctt ttaacagaat
     1621 atgggaaatt gcagctggct gggctggcag gtttccatag taaccaaaaa gagcctgggc
     1681 cttgaacaaa cctcagacca cagaaattca taaacagcag tcgttaaaac acgagattcc
     1741 ctgaaagctg caagagtgaa caagacttta cctttgaatg tgtgaggacc cctcccccag
     1801 aaaaatgaca ggctttaatc tattacctta gccctaaaga attgcttccc acataacaca
     1861 gacatctcct gacatggagc taaatcacgt cacaggtgac tggtaaggat tgttcatctt
     1921 tcctcaaaag agcatcgggt ttcttcaaaa caaaagagga tatttaaaga acctattaca
     1981 atttaaagag aaaatttgca gacaatgtct agtgaacaaa tgtgtatatt gtatctgtgt
     2041 tgttactgtg actgagtgtg taaaaactca gaagacggca gatgtattac tacattctaa
     2101 gacaaggagc tgcctccaaa tcaaggaaaa attaagtcaa actgttctca tgataaggat
     2161 ttctacttta cacatgcagt ttccttattg ccctcccacg attgagttgc atatgaatat
     2221 gaacttgatt tgaaggcgga cttggcaaag aagacccaaa tgtatttcaa agcagaaatg
     2281 aagtggtctt gggatctgtt actggatgac tgtgactttg accgaagcct gccagctttc
     2341 tgggtctcac gtttttcttg ctgaaaactg ttcagagagc tatttcctca tcagttttta
     2401 gatatgagca taagacaaac tgagatgaag ggagatagga ctaaaagtta ccctgcaaca
     2461 gattctttat aagatcaatg tcttcaaata ttacatctgt ctttcccaga aaatgttcct
     2521 cccttcccca tccctgccaa acaaaaaaaa actgaagtgt tccacttatt atctataaga
     2581 gaaatatatt ttgaaaattt ccattctcgt gagtagctct agtgtgccag taatggataa
     2641 tttaattaaa aaaacttgac tttccaaaat aaaaccaaag gagatgagtg acgtttacaa
     2701 attagaaatt gcaaaattgg ttatagtttt gccaccaaag acatggtata cctgtcttag
     2761 attttacctg cacacacaca cacatgctca cacacacaca cacacacaca cacacacatg
     2821 ctcacacaca cacacacacg cacacatgca cacacacaca cacacacaca cacacacaca
     2881 cacacgaatg agctgtccct tgtaattaaa gcgtggtcat caaatttcat ggaattccct
     2941 tagggaccaa gctgctgata taaaaatgga atggatgcga aacatggcac ctgtgccagg
     3001 catgtatcat tttagtgtgc aaccagttta ggttggtccc tttactgtga tctaaatcta
     3061 gcatggtggt gaaattccca agtgcattct acttttatcc acagtcattt gccaatgctc
     3121 gcctctccaa ggggctgcac agtgtaaaat ccccacatga agaactaaac ttagcagcta
     3181 ggctgcctgc cacacctgtt acaactgtgc accgtcagag agagcagctg cattctgcat
     3241 gattcataag aaattagcag gtaggctaag acttggatag gactttgaga tttatatttt
     3301 ccaaaatgca aagtcactct tacaggaata catattggtt ggttaagttg tgtctatatc
     3361 tggtactcag actccatgga cttttaaaat gttttacttt taaccttgca ttggctggca
     3421 atatagccaa gaacttaagg gcacgggtta cctcctcccc ccattccagt ttctcctttt
     3481 tgtgctcaca gtattcaaat gcactttaca gtagagaagt cagtggctgg aaaatagtaa
     3541 atctagttac acatccaaca acagtgcaca gcaagctcca cactgtcttg cagaacccga
     3601 taaagatgca gtctgcatta gcgcaccacc ccagcctaaa cttcagaata ttaaaattgc
     3661 tttggaagta ctacgctagg ggatgattcc taatttatga tcacgttgct caccaagcaa
     3721 acaaccaccc tctttcatca caacaacccc tatgggatcc agatcttaac ttagcagtaa
     3781 tcaagcacac agcagagatt acaccaaaat agtaatgtaa ttcaccccag tttcacgtga
     3841 tatgatatga atggaaatgc atttaagcag atgtgtcatc gtggtaactc acaaggtatt
     3901 tgatctttag gaaaatacac ggaatgcttt tatgacagca aagaaaagaa catctatctc
     3961 tatttctatt caagtatgat gtatcctcaa atgtattaat tagcatatta ccactttaaa
     4021 agtcagctta taataatcag tgggcacaat tcaaatttat ttttctgtgc aaaatagaga
     4081 cttgacaatt ctctgcccca ttctattctc cctcaaatgg catactttct gagatatgaa
     4141 ccgttaggtc atttacatgt acagtactct attttttaaa aaaacacttt attgggccat
     4201 atgtatatta aaaatgctca tatgtcaaca atttccagca atttagcctg atacaaacac
     4261 cacctgaatt ctccaaataa aatacaatat taatacgggt tctactaatg atgtacattg
     4321 catatatttc agggtcatta atcatatgaa acaaggcata ttgcaaaggg ttatggatta
     4381 tatattgagc aacaaattct aatgttaagc aagtaaagat gggtttatcc agtctcacct
     4441 ctccatcctt gccaaattca aaattctgga cttcagtaac taattttgaa tgtgcagatc
     4501 ccacaatatt tattaaatag gtagaagggg tccatttaat acatttaaaa gttatattaa
     4561 gtaatacatt ttattcaacc acatttgtac agggtaactg tggggttttt tgtttttgca
     4621 aaaatgaaag ttgtgtggga aaattggaaa ttctttggtt ttaacatgat tttacttgaa
     4681 ttagattcac attgtattaa aacagaatca gatttatatt aatgttcagc atgttgcttt
     4741 gatccctgta taataagcgc tgacgctttt gtttgctggt aacaaatgtc tgtcctctga
     4801 agatgtaaat ggcaccgcat tagcttcttt attgcaatat aaattataat aactgtgaca
     4861 ta
//
