LOCUS       XM_039080356            6709 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SUMO specific peptidase 1 (Senp1),
            transcript variant X1, mRNA.
ACCESSION   XM_039080356
VERSION     XM_039080356.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080356.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6709
                     /gene="Senp1"
                     /note="SUMO specific peptidase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 27 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:300193"
                     /db_xref="RGD:1310275"
     CDS             464..2638
                     /gene="Senp1"
                     /codon_start=1
                     /product="sentrin-specific protease 1 isoform X1"
                     /protein_id="XP_038936284.1"
                     /db_xref="GeneID:300193"
                     /db_xref="RGD:1310275"
                     /translation="MRNPLTATVFLPGSSPLGFCIFTTVSDVKRPEMEDTADGVKMDA
                     GEVTLVNHSSAFRAHLLPHSGFPEDQLALSDQQILPFRQGTLHRAFTGSTSSAAYNPD
                     YHSGFFVSKMRSPPLKRHNPSSDSFLGSGDIRTFGQSANGQWRNSTPASGSALQKPRN
                     SRSLYLETRKTSRCRILWNRVTDSCGLSNTFVGKSNHHCHVSAYEKSFPIKPAPSPSW
                     SGSCRRSLLSPKKTQRRHFSTAEETVQEEEKEIYRQLLQMVTGKQFSVAKPTTHFPLH
                     LSRCLSSNKNSLKDSLLRNGNSCASHVIGSDTSSSGSASILTAQEQLSHSAHSLISGT
                     PDVAFGSKDSALHHHLSAPHQPDSLPASNPQSEGSDSVILLKVKESQTPASRYLSPLK
                     RSTCPYIIPYSAVTDLLSSSPTFFQAELWIKELTSVYDSRARERLRQIEEQKALALQL
                     QNQRLQEQEHAVLDSVELHLRVPLEKEVPVTAAQETRKKSHQLTDSEDEFPEITEEME
                     KEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKG
                     FPSVHAFNTFFFTKLKAAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK
                     SVTYYDSMGGVNNEACRILLQYLKQESVDKKRKEFDTNGWQLFSKKSQEIPQQMNGSD
                     CGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL"
ORIGIN      
        1 gaaactgggg gaggggtgag gatggaggga gactgggccg ggaggctgtg tcggaccggg
       61 cccgctggcc tccgctgggc tgagcggaag agaggaccgc ggtggggacc gtgccctttc
      121 ttccgccccg cccctcggga ccacctccat tcccccctgc tgtccggtgg cggctgtctg
      181 gcccgggtct ggtagttggg cttactgagg ccgccctttc aggcctccgt ctcctgaccc
      241 gcggagaggc catctccatg cggtcacagc agggccttct ctgcgcccaa ctctactttc
      301 ccaaagagaa aaggccggtt gggattcccg gagtttcccg ccagagcagg gtcctctgga
      361 aggagagctg ttttcaacga ggaagttcag ctttcgctcc cacctgcttc acctctcttc
      421 cttgaaacct gaatgctgct tctcgactac tgtgtctcac gttatgagaa accccttaac
      481 tgccacagtt ttcttacctg gctcatcgcc tcttggattt tgtatcttta ctacagtcag
      541 tgatgtgaaa agacctgaaa tggaggacac tgccgacggg gtgaagatgg acgctgggga
      601 ggtgacctta gtgaaccaca gctccgcctt cagagcccac ctcctgccac actcaggctt
      661 tccagaggac cagcttgcac tttctgacca gcagatcctg cctttcaggc aggggactct
      721 acaccgagct ttcacgggtt ctacaagcag tgcagcctat aacccagact atcactcagg
      781 attctttgtc agcaagatga gatctcctcc cctaaaaaga cataaccctt cctcagacag
      841 tttccttggc tcaggtgaca taagaacctt tggtcaaagt gcaaatggac aatggagaaa
      901 ctccactcca gcatcaggat cagcattaca aaaaccaaga aatagccgaa gtctttacct
      961 cgaaacccgg aagacctcaa gatgtagaat cctctggaac cgagttacag acagttgtgg
     1021 attgtcaaac acctttgtgg gcaagtccaa tcaccactgc catgtgtctg cctatgaaaa
     1081 gtcattcccc atcaagcctg ccccaagtcc gtcctggagt gggtcgtgtc ggcggagtct
     1141 tttaagcccc aagaaaactc agaggcgaca tttcagcaca gcagaagaga cagttcaaga
     1201 agaagaaaag gagatctaca ggcagctgct gcagatggtc acagggaagc agttctccgt
     1261 agccaagccc accacacatt tccctttaca tctgtctcgg tgtcttagtt ccaataagaa
     1321 ctctttgaaa gactcactgt tgagaaacgg gaactcttgt gcatctcatg tcattggttc
     1381 tgatacttcg tcctctggat ctgccagcat tttaactgca caggaacagt tgtcccacag
     1441 tgcacattcc ctgatatctg gtaccccaga tgttgccttt ggatccaaag actccgctct
     1501 tcaccatcac ctctctgcac ctcatcagcc agacagttta ccagcatcaa atccacagtc
     1561 tgaagggtca gactctgtga ttttactcaa agtgaaagaa tctcagacgc cagcttccag
     1621 atacctcagt ccattgaaga gaagtacttg cccctacatt attccttatt cagcagtcac
     1681 ggatctgctc tctagcagtc ctactttctt ccaggcagag ctttggatca aagaattaac
     1741 tagtgtttat gactctcgag cccgggaaag attgcgccag attgaagagc agaaggcatt
     1801 ggccctacag cttcaaaacc agagactgca ggagcaggag catgcagtgc ttgattccgt
     1861 agagctccac cttcgtgttc ctctggaaaa ggaggtccct gtcacagcag cccaagaaac
     1921 caggaaaaaa agtcaccaac taactgatag tgaagacgag ttccctgaaa ttacagagga
     1981 aatggagaaa gaaataaaga atgtgtttcg taatggtaac caggatgaag tcctcagtga
     2041 ggccttccgc ttgaccatca cacgcaaaga cattcagact ctgaaccatc taaactggct
     2101 caatgacgag atcatcaatt tctacatgaa tatgctaatg gagcgcagta aagagaaggg
     2161 atttccgagt gtacatgcct ttaatacctt tttcttcact aaactcaaag cagctggtta
     2221 tcaggcagtg aaacgctgga caaagaaagt ggatgtgttt tctgttgaca ttctcctggt
     2281 gcccattcac ttgggtgtgc actggtgtct ggcggttgta gactttagaa agaagagtgt
     2341 cacctactat gattctatgg gcggagtaaa caatgaggcc tgcaggatcc tcttgcaata
     2401 cctaaaacaa gaaagtgtcg acaagaaaag gaaagagttt gataccaatg gctggcagct
     2461 cttcagcaag aaaagccagg aaatcccaca gcagatgaat ggaagtgact gtggaatgtt
     2521 tgcttgcaaa tatgccgact gcattaccaa agacagacca atcaacttta cacagcaaca
     2581 catgccatat ttccggaagc gaatggtctg ggagatcctc caccggaagc tcttgtgaag
     2641 actgtctcag tgagcagaca ctgagcgtgt gggggaccag cctttgccat cgacagccag
     2701 agagcttgga gacagccgct cctaacccct gttctgtaca gcccttggtc ctgggccaga
     2761 ccaggcaaga cgcactcaca agcacacctg ccttcctttt gtatctcaga tactattttt
     2821 gcaaagaaac tctggtgctg tgaaaggggt gagggacatc cctactgaag agagaggctg
     2881 cttttcactt cagctctgcc gtcttgtttt ccaagggctc cagcctcact gagtccctca
     2941 ttaggagtcc aaggaaaact ggggaagaat cttggtttca tgtaaactct tgttgctaga
     3001 ccttaccgag aagtaggaaa gggcacggca gcaggtagga taaaaccacc agcgccgtag
     3061 tcatacacgc agtccctagg atgcagggtc acaaatggaa ctgtgaactg gactctgagg
     3121 cacacgctta agtcccctcc tccagagcct tcctatttat gtgccctcca tgaaactgac
     3181 tgcttctcct caaggctgtt tcctcactgg tcgagtccca tcctgagcac actgcacaag
     3241 ccccggcaga ccctaaagcc tcgagcaggc ctttcctcac aggcgggggt tgcatgtgcg
     3301 agcaggccgt gctgtgggga gagccaccca ggagtgttga gtgcagcagc cagggcccag
     3361 cttcactgct gcctgctgct gaccaagaag tgggacttca gtggtcagag tcacatgcca
     3421 gagttggatg agtacaggtc tagggtgtct gtggctagtt agtttaaata tgtttctaac
     3481 cacagagagt tttatataca tatataccta tatgtgtgta tacatacata tatatacaca
     3541 cacataaatg tgaaatatat atttcacagg gatatgcttt taaaagaaaa aaagactgaa
     3601 tgtgttcacc atttagtctg taggtttatt ttcatctttc aaactccagc acacagagat
     3661 cccagcaagc cctgtttatg ggcatttgta gatttcctaa gagtattttg agacctggat
     3721 gaatctggtt taggagtaaa ggttatcaag gtaaatgaca ttgccagctg aagaacgggt
     3781 ggagcttagc ttgataaact tgaggttttt aaactgctct ttccttcgtt gtttgtagca
     3841 cctctcccgc cctcgcagag ctcctgaggt gagatggtga ggtgacagtg ccagtgtcgt
     3901 tttgtactta agttccacta cagggacttt ttctactttg tgtatggtga ccggtagttt
     3961 tctatgcagt cttctccccg ccgcccctgt gcccagccct tccagcactg tgctctctcc
     4021 ttgggcttaa ttggaaattg tactctgttt tataccaagc ctgtttagta catttttcta
     4081 tgttttacca caagttacaa tttgaaaaca acaactattt tttttactac gccattgtta
     4141 aatgaatgtt cggtctccac tccagcagcc tccctccctg catgttgggg gccggggcct
     4201 gtaccttagt gtttctctct cgctgctcct tcctcactcc tcctcccttt tctcttgatt
     4261 ttccatagga aataaatagc tttctgtata tgagttgctg ggccctttca cactctctct
     4321 agagcactgg cacagactca gcgcaggagt ggagaacact gctgaacgct ggtcctcgct
     4381 gacgtaggca cagctcacac agacctgatc gaaagacaga cagacagctt ctcaggcctt
     4441 gctcactcac accccgggct cttcacaaga tggttcccac tgtttgttcc tttacacaga
     4501 atctgttttg tcttccccag agactttttg tatggaccaa agcaacaaat actcattgcc
     4561 atggacaaca gagtgtgagg tgtacaacaa aagcactttg tgaaatagag ttgtcgagcc
     4621 agtctgaggt tggctccctt tctccgatgc agtttaaata ggaccaggta aaagccagtg
     4681 atcccaagac cactgtcctt cccaggagta ataggagtaa gtaagtcaga ccgtgacggg
     4741 tggcctaatg ggaacaagta cagacttgca cacggtaggc catcctcaga gagccagcta
     4801 agaggagcag gacaaggatc tgaaaactcc ttcaagtcaa gagtgagcga atggcaatga
     4861 caagacggaa gctgtgtgta tttcatggcc aagggcatgc tgccagtgtc ttgtttgacc
     4921 tgctctaaac agaatatgcc tgtcgttctc cctttctgtc cctttcccct atgttccatg
     4981 ctcatagccg tctcccctcc cctataaaag ggatatctga gggaggataa gcactacagg
     5041 gcggttacag actccagcaa ccccagcagt catccctgca gtgtacacag agaaaatgag
     5101 atgatcctgc cctttgcaga acatgtgcta tgatgtgtgg aagctgcatc ctcttatcac
     5161 ttaagatcca ttgtgacgcg caggagtcct gtgtagggtt cagtgtgagt acttgtccac
     5221 agacagccta gagactcgct gcccattcac tcttctgtga ggactactac tagtccttag
     5281 actgcctcag cactgcttta gcatttagtg gttcaagggg acagcagatg acccagcaaa
     5341 atgttccagc accaccacct ggtttcccac acccatggtg caatctatca tcagtggatg
     5401 gagagagcat tcttcaaaga gctttgtgtt cgaatctcca cctctgatct tcccgtgtca
     5461 tcctcccaag ctccgaccga aggtcagagt aaagagagac tgacatctta cggtttcctt
     5521 gctctacctt cagtaagacg ctctgagtca atgtctaagg tcaggtcagc gctacctcgg
     5581 gtgtagaatt agaactacac aagagtctgg ctaaatgcag cgtgcctaga agtaggccgg
     5641 ctgcgggaag gcaaaggtgg gagagtggta cccgagggga acgcaggctc cattcttcgc
     5701 aggcacattc agttcttgtg taaggaccca ctaagtatgt gcaccgaaat ctgatttaaa
     5761 gctctccctg gtcacactat ctatggcctg acttctccct gtttgtcttg tcatctgctt
     5821 ttctcacagg ggtggggcct ttcaggggag ggggcatgga actgccaagc tgaggagaat
     5881 ggattggtgc tgtttttcta gccaggattg caagcatctg tattctagtc tggaaagaac
     5941 aagacagaca gggctcgttc tccgaaacat ttcttaagaa taacagtgtt gcaagggtgc
     6001 gaggagactt gattatttgt cataacttcc aaatactgta ggctcagagc gcagatcctg
     6061 acctccaaca gtgttctctt ggcctttaac agaagcacct tcctcatccc atgttcagca
     6121 ggttgcagtg tggggctctc aggctatacc ccagaggctt atcagaacat cttcttaact
     6181 ctgtgggtag caggttcatc ctccaccctt tttattgaca gggatgcatg ccccttgcac
     6241 attcagatgg tgggttcctt tctctttgtc ttgtcctata aaggcacttg ccttacttga
     6301 aactcatgga aagcttctgt ctgagggttt cgtaagtgtg aggtcaagca ctagactttg
     6361 gagccctgaa gggtgagaaa gatggtttaa caaaggaagt acaagccact gtgtcctcag
     6421 ggccttacag tctgtaagtt tatagtttgc ctgatttgga aggctgagta aacacagaca
     6481 caccttttca agaaagaata caaactcatt agcacatagt tcagaatgaa gctgaagtgt
     6541 gggggaaagg gcagaggtgg aaatgtgtca gggatgatgt cgcctttatc tgtatatgtg
     6601 actcccttgg gtttttaaat tcacttattt aaaataaatt ctgtggattt tgcttctgtg
     6661 ctttgactgg gaactcccag gactcaataa tatatttgtg tgtctctga
//
