LOCUS       XM_017590809            6775 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus semaphorin 6C (Sema6c), transcript
            variant X12, mRNA.
ACCESSION   XM_017590809
VERSION     XM_017590809.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017590809.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017590809.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6775
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6775
                     /gene="Sema6c"
                     /note="semaphorin 6C; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 23 ESTs, 1 long
                     SRA read, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 24 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:29744"
                     /db_xref="RGD:3659"
     CDS             307..3189
                     /gene="Sema6c"
                     /codon_start=1
                     /product="semaphorin-6C isoform X1"
                     /protein_id="XP_017446298.1"
                     /db_xref="GeneID:29744"
                     /db_xref="RGD:3659"
                     /translation="MPRAPHSMPLLLLLLLSLPQAQTAFPQDPIPLLTSDLQGTSPSS
                     WFRGLEDDAVAAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFLTW
                     RSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGE
                     ELSGQARCPFDATQSTVAISAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSK
                     WLREPHFVYALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHW
                     TSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFY
                     LDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAALFSSSQDLPDDVL
                     LFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVLFLGSNDGTVL
                     KVLPPGGQSLGPEPIILEEIDAYSHARCSGKRSPRAARRIIGLELDTEGHRLFVAFPG
                     CIVYLSLSRCARHGACQRSCLASLDPYCGWHRFRGCVNIRGPGGTDVDLTGNQESMEH
                     GDCQDGATGSQSGPGDSAYVLLGPGPSPETPSSPSDAHPGPQSSTLGAHTQGVRRDLS
                     PASASRSIPIPLLLACVAAAFALGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSL
                     RSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPEGGSPPELACLPTPETTPELPV
                     KHLRASGGPWEWNQNGNNASEGPGRPRGCSAAGGPAPRVLVRPPPPGCPGQEVEVTTL
                     EELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGAALFVDSSPMPRDCVPPLRLDVP
                     PDGKRAAPSGRPALSAPAPRLGVSGSRRLPFPTHRAPPGLLTRVPSGGPSRYSGGPGR
                     HLLYLGRPDGHRGRSLKRVDVKSPLSPKPPLATPPQPAPHGSHFNF"
ORIGIN      
        1 gcggctgggg ccgagcccag agccccgggc ggtcgcattg ttttcctccg ccgatctgcg
       61 gcgggaatag gggcttctac tcagacccaa gactctcgta acccgacagc gccttggagc
      121 ctaaatctaa gcacgattca gacaggacgc tcgtcgcgtc ttgccagagc cccaaccacg
      181 gattgcgaac tctgcccgag ctaggggccg cctgctgctc cctggacctt gctgacccgg
      241 atctcggagc aaggccagca tatgggtgag ggggtactcc ctggggcttg agctgccccg
      301 cacaggatgc cccgtgcccc ccactccatg cccttgctgc tgctgttgct gctgtcactc
      361 ccccaagccc agactgcctt tccccaggac cccatccctc tgttgacctc tgacctacaa
      421 ggtacctctc cgtcatcctg gttccggggc ctggaggacg atgctgtggc tgcggaactt
      481 gggctggact ttcagagatt cctgaccttg aaccggacct tgcttgtggc tgcccgggat
      541 cacgttttct ccttcgatct tcaagcccaa gaagaagggg aggggctggt gcccaacaag
      601 tttctgacat ggcggagcca agacatggag aattgtgctg tccggggaaa gctgacggac
      661 gaatgctaca actacatccg tgttcttgtt ccctgggact cgcagacact ccttgcctgt
      721 ggaacaaatt ccttcagccc tgtgtgtcgc agctatggga taacatctct gcaacaggag
      781 ggtgaggagc tgagtgggca agctcgatgc ccctttgatg ccacccagtc cactgtggcc
      841 atctctgcag agggtagttt gtactcagcc acagcagcag atttccaggc cagtgatgct
      901 gtggtttaca gaagccttgg acctcagccc ccactccgtt ctgcaaagta tgactccaag
      961 tggcttcgag agccacactt tgtctatgct ttggagcatg gagaccatgt ctacttcttc
     1021 ttccgagaag tctctgtgga ggacgcccgc ctggggaggg tgcagttttc ccgggtggcc
     1081 cgggtgtgta aacgtgacat gggtggctca ccacgggcct tggatcgcca ctggacatcc
     1141 ttccttaagc tgaggctcaa ctgctccgtc cctggggact ctaccttcta ctttgatgtc
     1201 ttacagtcct taactgggcc tgtgaacctg catgggcgct ctgccctctt tggggtcttc
     1261 actactcaga ccaatagcat tcctgggtct gcagtctgcg ccttctacct agatgacatt
     1321 gaacgtggct ttgagggcaa gttcaaggag cagaggagtc tggatggggc ctggactcct
     1381 gtgtctgagg acaaagtccc ctcacccagg ccagggtcct gtgcaggtgt gggtgcagct
     1441 gccttattct cctcctctca agacctgcct gacgatgtcc tgctcttcat caaggcacac
     1501 ccactgctgg atcccgctgt gccacctgcc acccatcaac ctctcctcac tctgactagc
     1561 agggctctac tgacccaggt agctgtggat ggtatggctg gcccccacag aaatactaca
     1621 gtcctgtttc ttggctccaa tgatgggaca gtgctgaagg tgctacctcc agggggacag
     1681 tctctgggac ccgagcctat catattggaa gagattgatg cctacagcca tgcccggtgc
     1741 agtgggaagc ggtcaccccg agctgctcga cggatcatag ggctggagct ggacactgag
     1801 ggtcacaggc tttttgtggc ctttcctgga tgcatcgtct acctctctct cagccgctgt
     1861 gcccggcatg gagcatgtca gaggagctgc ctggcttctc tggacccata ctgtggatgg
     1921 catcggttcc gaggctgtgt gaatatcagg ggacctggag ggactgatgt ggatctgact
     1981 gggaaccagg aatccatgga gcatggtgac tgccaagatg gagcgactgg gagtcagtct
     2041 ggccctggag attctgccta tgtgcttctg ggtcctggcc cttcccctga gacccccagt
     2101 tcccccagtg atgcccaccc agggccccag tcttccactc ttggagctca cactcagggc
     2161 gtgcgcaggg acctttcccc agcctcagcc tcccgatcca tccccatccc actcctcctg
     2221 gcctgtgtgg cggcggcctt cgctttgggc gcctcagtct ccggcctctt ggtgtcctgt
     2281 gcttgtcgtc gcgcgaaccg ccgtcggagc aaggacatcg agaccccggg gctgccgcgc
     2341 cccctctccc ttcgcagtct ggcgaggctg cacggtggcg gtcctgagcc cccgcctccg
     2401 cccaaggatg gtgatgcagc gcaaacgccc cagctctaca ctaccttcct gcctccgccc
     2461 gagggcggat ccccaccgga gctggcctgc ctgcccaccc cggagaccac gcccgagctg
     2521 ccggtgaagc acctccgtgc ctccgggggt ccctgggagt ggaaccagaa cgggaacaac
     2581 gcttcggagg gcccaggccg cccacggggc tgcagcgcgg cgggcgggcc cgccccgcgc
     2641 gtgctggtga ggccaccgcc ccctggctgc cccgggcagg aggtggaggt gaccacgctg
     2701 gaggaactgc tgcgctacct gcacggcccg cagccgccca ggaagggcag cgaacctctc
     2761 gcctccgccc cgttcacctc ccggccgcct gcctcggagc ccggcgccgc cttgttcgtg
     2821 gactccagcc cgatgcctcg tgattgcgtg ccgccgctga ggctcgacgt accgcccgac
     2881 ggcaagcgcg cggccccgag cgggcggcct gctctctcgg ccccggctcc acgcctgggc
     2941 gtcagcggca gccgaagatt gcccttcccc acgcaccggg cgcccccggg cctgctcacc
     3001 cgagtcccct cgggaggccc gtccaggtac tccggggggc ccgggaggca cctcctgtac
     3061 ctgggccggc ccgacggcca ccgcggccgc tccctgaaga gggtggacgt gaagtctcca
     3121 ctgtcgccca aaccgcccct cgccacaccg ccgcagcccg ccccgcacgg cagccatttt
     3181 aacttctgac agaagctgct agcgcccgtc gaggcgctgg aggcctaggc ctgcggaggc
     3241 cgctggcctt cccggactcc aagagtctcc cggggtcccc tctcgcctcg gtttatttat
     3301 tgactgtctt tccccctgtc ctttggcgag gagctcgccg ctcggagcgc cagcatttca
     3361 ggggacctgg ccgactccca ctccccgctc ccttccagcc acgctgcctt aactcgtcgc
     3421 tccggactcc cgcggactgg gccccgggcg ggccggccgg ggctggagcc gcgcgctgtg
     3481 tacagagtcc tccggcctcc tggggccggg acgtgcctcc tcctactgtg taggagcccc
     3541 cacccctcgc ttcccaatac agccgtgtcc cccagccgct gcctgacttt ctcgcggtgc
     3601 gggaggggaa ggagggcggg gccgcccggc cctctgggta cctgtgctcc tgaaagtctg
     3661 cctccacttc agctcggccc ctaagtctct ccggagcaat tggcttggcg ggtgtcccac
     3721 cggggttaat caggaaaggt ttcctgaagg aggcaagcaa agacctggtg tgtgtgggat
     3781 gagccggggc ccaggagagc agtgggtact gattgggggt gctggggaag gcgctcagca
     3841 cgtatctgga tagaggtcag gcacctttcc acggcctaca ctatggggtg ggagagggaa
     3901 cttttggaga aataaaacga agctgctgcg tgatttgaat ttcacatcag caaatcttgt
     3961 cctagaaaga gaacttggct tagaaggatt tgggctgctt gtgcggtagg ctgcaaagca
     4021 aaacaaaagc cagcagaaga tgagcccttt aagaggcgag ggtttgcccc agcggttgat
     4081 tctctgtcct aaggggcagt tccagctgct tgctagccca gggctagaga gactcatgtg
     4141 tgtccctcgc gatgctccaa gactctggct acagttagct gcacaatatc ctgggtatca
     4201 aaaagaaaga tgacccggaa cgcttgtccc acccaccgcc ctggcgctag gaccacttaa
     4261 agcctctcgt gggtgctggc tgcgttggag gatttgaggg aatttggcgg gcgcgtgtca
     4321 acactatccg cccttttcca cctccaggcc acttcctgtt ggcgcctcct agaggtccga
     4381 ccaagccctg cagctgaata agctgtcagt tctctggttg cttgaatgtt ctgagaacta
     4441 tttggtcaaa agttccaagt gtatggttta cctcttcatc tttacctttg ggatggtaac
     4501 tgccttaagc ttcctttccc atctgaaata atagggtcga aagactcaaa tactataatg
     4561 tgcaaatgcc ttgtgaaaga aatcctgaga tggtggttcc tcccgtctca ctagtttcgg
     4621 ctgtgtgtat acctaaacca acttttgtgt cggcttttac tagatacatt ttctctttgc
     4681 attataaatt caacgtagag attttcccct caaggttttt agccctccga atgtctctta
     4741 atgcagttca ggtaaacgta agctaattct aattggccag gggtctttca gaatttaaca
     4801 tctcttaact tggggcattt tttgccaggt tcagtttatt cctccttggg gaccttaagc
     4861 tgagatgggc tgttgttagt atcctaaaca gtgctgaggt acgaggaaga ggggatgcct
     4921 ttctttaagt cacctggcta attaatctct tcaaagcatg atagctagtg aagggtgcat
     4981 ggagcaggag gaacttgaat gctgtcctat agctagtctc tctcaaaaga tgaagaagag
     5041 ggacaagatg gttcagtggg tgaagtgctt gcctgcctag tctagttacc agaagctcat
     5101 ggtggaaaga gaactctcta aaattatcgt cccacctcca catgtgtggc attgcaagca
     5161 acccctcccc caatctctct catacaaatc ctgaagaggt gaaagagggc cttggataca
     5221 gctctgttgg tagaaggcat tgcggcatgt actgacaata ctcagtttta atccaagcac
     5281 cttaagacag ggagtggtgg tgcctgccta taattccagc accctggaaa gaggcaagag
     5341 gtctgcagat tggagggcag cttgggctat gctgtgagat ggtatcagga aggaaagaag
     5401 gaaaagacgg agaaaaggtc acacaaatgg caggtttgag attggcttaa aactatgaga
     5461 ctcaaaacca gccccaaaat aaaaccagat ttgtaaggaa ctaaactgac tacagcactt
     5521 gagaggcaca gctccggtat acataagtcc caggccagcc agggtagcac aggaagaccc
     5581 agtcccagca aaaagaatag aagcacagtt atccccaatg actatatggg attgattcta
     5641 ggacagttaa cacatctaaa aaaagagtct gtggaaattc aagtccctca tataaaagga
     5701 catggtattt gcatgtgacc catgcccagc ctgtgctata ctttaaatca tctctaggtt
     5761 acttaacagc acccaataca acataaatag caaacttttt tggaaacaag gttgtcctcc
     5821 agtatgtagt agatgctatc tttgacctga tcctccagca gccttagact cacaggttct
     5881 gggatgacag ataggagctt cccagtatga atttatggtg tacgctctat gatgaagcaa
     5941 atctgttcag tacacacagt ttctccccaa caaacccggg gccccagtgt agacagacgc
     6001 catcatggag ttacagctcg gctctcatcc caggattctt gcaggtagca gcactttaca
     6061 gttcagtgtc ctgctgtatt cacttatcag tgtttatcaa gaggaaccca gagcaagtga
     6121 aagcaactgt gttgcaataa gaacaagtcc ttaggctctt ccttgaaacc ctttgtagtt
     6181 ttactaaacc tctctaagca gtcgcccttc cccaccccac cccaccccat acacatgatg
     6241 tttctcggta gctttggctg ccctggaatc cactctgtag acaaggctgg tctccaactc
     6301 cgagatctgc ctgcctctac ttcccaagtg ctgggatcaa aagtgtgcac cactatgtct
     6361 gggtctcaat ttattttcta aggaatggaa aaaaaataca ataacagatt tgtcaggcat
     6421 gtaaatacat aggcttaaac caagcaggtt aggtaggtac gtggtgggcc atggttatct
     6481 cacttcctcg gagtctgagt caggaacatt atgaatccaa ggcaagcctg aacaacatag
     6541 cttcctctca ccatctcgaa aaagccccac aattaagtgt tctgtaggac atggttattt
     6601 gcccaaaata acataggcca ccaccaaaga ggcaatccct tattacttat gaaaacgttc
     6661 tactggcaga tttaatagtg gatgataaat taagggttag ttgcagacat tattgctaaa
     6721 aatggaaaga cagacaaatg tcctttaagt acaattaaaa aatctgcttg gcaga
//
