LOCUS       NM_001415135            4591 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus semaphorin 5B (Sema5b), mRNA.
ACCESSION   NM_001415135 XM_039088339
VERSION     NM_001415135.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4591)
  AUTHORS   Matsuoka,R.L., Chivatakarn,O., Badea,T.C., Samuels,I.S., Cahill,H.,
            Katayama,K., Kumar,S.R., Suto,F., Chedotal,A., Peachey,N.S.,
            Nathans,J., Yoshida,Y., Giger,R.J. and Kolodkin,A.L.
  TITLE     Class 5 transmembrane semaphorins control selective Mammalian
            retinal lamination and function
  JOURNAL   Neuron 71 (3), 460-473 (2011)
   PUBMED   21835343
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 22, 2022 this sequence version replaced XM_039088339.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.47178.1,
                                           SRR26643293.69373.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-312               JAXUCZ010000011.1  78730278-78730589   c
            313-515             JAXUCZ010000011.1  78649538-78649740   c
            516-615             JAXUCZ010000011.1  78644208-78644307   c
            616-661             JAXUCZ010000011.1  78639640-78639685   c
            662-724             JAXUCZ010000011.1  78626938-78627000   c
            725-823             JAXUCZ010000011.1  78626562-78626660   c
            824-1037            JAXUCZ010000011.1  78625972-78626185   c
            1038-1323           JAXUCZ010000011.1  78625076-78625361   c
            1324-1459           JAXUCZ010000011.1  78620751-78620886   c
            1460-1667           JAXUCZ010000011.1  78619236-78619443   c
            1668-1875           JAXUCZ010000011.1  78618903-78619110   c
            1876-1993           JAXUCZ010000011.1  78613332-78613449   c
            1994-2175           JAXUCZ010000011.1  78612996-78613177   c
            2176-2319           JAXUCZ010000011.1  78611857-78612000   c
            2320-2467           JAXUCZ010000011.1  78611580-78611727   c
            2468-2693           JAXUCZ010000011.1  78611272-78611497   c
            2694-2912           JAXUCZ010000011.1  78610963-78611181   c
            2913-3083           JAXUCZ010000011.1  78610313-78610483   c
            3084-3233           JAXUCZ010000011.1  78610060-78610209   c
            3234-3278           JAXUCZ010000011.1  78609714-78609758   c
            3279-3484           JAXUCZ010000011.1  78609134-78609339   c
            3485-4591           JAXUCZ010000011.1  78607805-78608911   c
FEATURES             Location/Qualifiers
     source          1..4591
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..4591
                     /gene="Sema5b"
                     /note="semaphorin 5B"
                     /db_xref="GeneID:303901"
                     /db_xref="RGD:1308914"
     exon            1..312
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            313..515
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     CDS             362..3643
                     /gene="Sema5b"
                     /note="sema domain, seven thrombospondin repeats (type 1
                     and type 1-like), transmembrane domain (TM) and short
                     cytoplasmic domain, (semaphorin) 5B"
                     /codon_start=1
                     /product="semaphorin-5B precursor"
                     /protein_id="NP_001402064.1"
                     /db_xref="GeneID:303901"
                     /db_xref="RGD:1308914"
                     /translation="MVVPGPLALSLLLPSFTLLLSHLSTSQDITSEPSSEQQLCTRRE
                     HPIVAFEDLKPWVSNFTYPGVRDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQAT
                     EWASSEDTRRSCQSKGKTEEECQNYVRVLIVSGRKVFMCGTNAFSPVCSSRQVGNLSR
                     AIEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQ
                     YNSKWLNEPNFVAAFDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLED
                     TWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNL
                     SAISKAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLFL
                     MSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTASRS
                     LRGCYLEELHVLPPGRLEPLRSLRILHSARALYVGLSDRVLRVPLERCSAYLSQGACL
                     GARDPYCGWDGKRQLCSTLEDSSNMSLWIQNITACPVRNVTRDGGFGPWSPWKPCEHL
                     DGDNSGSCLCRARSCDSPRPRCGGLECLGPAIHIANCSRNGAWTAWSSWAQCSTSCGI
                     GFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGG
                     GVQSRRRSCENGNSCPGCGVEFKTCNPEACPEVRRNTPWTPWLPVNVTQGGARQEQRF
                     RFTCRAPLPDPHGLQFGKRRTETRTCPADGTGACDTDALVEDLLRSGSTSPHTLSGGW
                     ATWGLWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS
                     CWTAWSQCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSLWS
                     EWGVCTEDGAQSRSRSCEELVPGPGACVGNSSQSRPCPYSEIPVILPASSVEETASCG
                     GFSLIHLIVTGVSCFLGSGLLTLAVYLSCQHCQRQSQESTLVHPATPNHLHYKSGGTP
                     KNEKYTPMEFKTLNKNNLIPDDRATFYPLQQTNVYTTTYYPSPLNKPNFRPEASPGQR
                     CFPNS"
     exon            516..615
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            616..661
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            662..724
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            725..823
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            824..1037
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1323
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1459
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1667
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1875
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..1993
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1994..2175
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            2176..2319
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            2320..2467
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            2468..2693
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            2694..2912
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            2913..3083
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            3084..3233
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            3234..3278
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            3279..3484
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
     exon            3485..4591
                     /gene="Sema5b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actctcctcc tcccggctcg ctccggcgcg cggggtctgg agctagttgg agcgcggggg
       61 ttgatgctgg agcccagctc cgcggagccc ggcgggtcgg ccgcgcatcc agcggctgtt
      121 ggagcagccg gagcgcagcg ggcccgacag gagtcggaga ctgtgacgga gtgctgagcc
      181 catacccggg atccttgctg ttcgtccatc ccattcccag accggccgcc agccctcgga
      241 ttcgtccctg tggtcacaca gccccgagcc cagggccgcg gggagcccag cacctgcgcg
      301 tgctgccggg aggtcttccc tctggcttgc ctccaggagc tggactgcag aggggcccac
      361 catggtagtc ccaggacccc tggctctctc gctgctgctg cctagcttca ccctgctgct
      421 gtcccacctc tccacctccc aggacatcac cagtgagccc agcagtgagc agcagctgtg
      481 cacccggagg gagcacccca tcgtggcctt cgaagatctg aagccgtggg tgtctaactt
      541 cacctaccct ggagtccggg atttctctca gcttgctctg gatccctcca ggaaccagct
      601 catcgtggga gccaggaact acctcttcag actcagcctt gccaatgttt ccctccttca
      661 ggctacagag tgggcctcca gtgaggacac gcgccgctcc tgccagagca aagggaagac
      721 tgaggaggaa tgtcagaact acgttcgagt cctgattgtt tccggccgga aggtgttcat
      781 gtgcggtacc aatgcctttt cccctgtgtg ctccagcaga caggtgggga acctcagccg
      841 ggctattgag aagatcaatg gcgtggcccg ctgcccctat gacccacgcc acaactctac
      901 agccgtgatc tcctcccagg gggagctcta cgcagccacc gtcattgact tctccggtcg
      961 ggacccggcc atctaccgta gcctgggcag tgggccgccg cttcgcactg cccagtataa
     1021 ctctaaatgg ctcaatgagc caaattttgt ggcagccttt gacattgggc tgtttgcgta
     1081 tttcttcctt cgggagaatg cagtggagca tgactgtgga cgcactgtgt actctcgggt
     1141 ggcccgagtg tgcaagaatg atgtaggggg tcgtttcctg ctggaggaca catggaccac
     1201 attcatgaag gcccggctca actgctcccg cccaggggag gtccccttct actataacga
     1261 gctgcagagt gccttccatc tgcccgaaca ggacctcatc tatggcgtct tcaccactaa
     1321 cgtaaacagc attgcagctt ctgccgtctg cgccttcaac ctcagtgcca tctccaaggc
     1381 tttcaatggc ccatttcgtt accaggaaaa ccccagggct gcctggctgc ctatcgccaa
     1441 ccccatcccc aatttccagt gtggcaccct gccggagact ggccctaacg agaacctcac
     1501 ggagcgcagc ctgcaagatg cacagaggct cttcctgatg agcgaagctg tgcagccggt
     1561 gacgccagag ccctgtgtca cccaggacag cgtccgcttc tcacatcttg tggtagacct
     1621 tgtgcaagct aaggacacac tgtaccacgt actctacata ggcactgagt cgggtaccat
     1681 cctgaaagcg ctgtccaccg ccagccgcag tctgcgtggc tgctacctag aggaactgca
     1741 tgtgctgccc cctgggcgcc ttgaacctct gcggagcctg cgcatcctgc acagcgcgcg
     1801 tgcgctctac gtgggattga gcgaccgggt gctgcgggtc ccgctggaga ggtgctcggc
     1861 ctaccttagc cagggggcat gcctgggagc acgggaccca tactgcggct gggatgggaa
     1921 gcggcaactt tgcagcacgc ttgaggacag ttccaacatg agcctgtgga tccagaacat
     1981 cacagcctgt cctgtacgaa atgtgacacg ggacgggggc ttcggcccat ggtcaccatg
     2041 gaaaccatgt gagcacttag atggagacaa ctcgggttct tgcctatgcc gggccagatc
     2101 ctgtgactcc ccaaggcccc gctgtggggg cctcgaatgc ctggggccag ccatccatat
     2161 cgccaattgc tccaggaatg gggcgtggac cgcatggtca tcgtgggctc agtgcagcac
     2221 gtcctgtggg atcggcttcc aggtccgtca gcgaagttgc agcaacccag cgccccgcca
     2281 tgggggccgc atctgcgtgg gcaagagccg ggaggagcgg ttctgtaatg aaaatacgcc
     2341 ttgcccggtg cccatcttct gggcttcctg gggctcgtgg agcaagtgca gcagcaactg
     2401 tgggggtggc gtgcagtcgc gccgtcgttc ttgcgagaat ggcaactcgt gcccgggttg
     2461 cggcgtggag ttcaagacct gcaaccccga ggcctgccca gaagtgcgac gcaacacacc
     2521 ctggacgccc tggctacccg tgaatgtgac gcagggtggc gcgcgccagg agcagcgatt
     2581 ccgcttcacc tgccgcgcgc cgctgccgga cccgcacggt ctgcagttcg gcaagaggag
     2641 gacggagacc aggacctgcc cggctgatgg caccggagca tgcgacactg acgccctagt
     2701 ggaggatctg ctgcgcagcg ggagcacgtc accacacact ctgagtggag gctgggccac
     2761 ctggggcctg tggtcatcct gctcccggga ctgcgagctg ggcttccgcg tacgtaagag
     2821 aacttgtacc aacccggagc cccgcaacgg gggcttgccc tgcgtgggag atgctgcaga
     2881 gtaccaggac tgcaaccctc aggcttgccc agtgcggggt gcctggtcct gctggactgc
     2941 atggtcccag tgctcagcat cctgcggtgg tggccactat caacgcaccc gttcctgcac
     3001 cagccccgca ccgtccccag gtgaggacat ctgcctcggc ctgcacacgg aggaggcact
     3061 atgtgctaca caggcctgcc cagaaggctg gtcactgtgg tctgagtggg gtgtctgcac
     3121 ggaggatggg gcccagagca ggagcaggag ctgtgaggag cttgtcccag ggccaggtgc
     3181 ctgtgttggc aacagcagcc agagccggcc ctgcccctac agtgagattc ctgtcatcct
     3241 gcctgcttcc agtgtggagg agactgccag ctgtggaggg ttcagtctca tccacctgat
     3301 agtcactggc gtgtcctgct tcctgggatc tgggctactg accttggcag tgtacctgtc
     3361 ctgccagcac tgccagcgcc agtctcagga gtccacactt gtccatcccg ccacccctaa
     3421 ccacttgcac tacaaaagcg ggggcactcc caagaatgag aagtacaccc ccatggaatt
     3481 caagacactg aacaagaaca acttaatccc tgatgacaga gccaccttct acccactgca
     3541 gcagaccaac gtgtatacaa ccacgtacta ccccagccca ctgaacaaac ccaacttccg
     3601 gcctgaggcc tcacccggac agcgctgttt ccccaacagc tgatcccacc ctcctgggac
     3661 tcgggctcct tgccttccca aggcagagaa caggggaacg agaccataga accactttgg
     3721 tttcccctct gcattgggcc gagaacttgc tgcctggcca gtgggggtcc catccggctc
     3781 cagaaagctc tggctgtcat tgaccatggg agagagggct ggcttcaggc tggcacatgg
     3841 ctgcagatcc agctcagccc aggtctcatg gtctcctgtg acccaccatc actttcccct
     3901 gccatgtctg agctgtgaac ctactgggta tgtgaggaac ttggagaata gacatgacag
     3961 agtgggctct tatgtttggg ttggaaatga cttccaatgg ccaccatcaa ctaaatttgc
     4021 ccccttttta ctggtccccc aaaaggcctg ggctgagtcc agcttgtcag tgaaaggaat
     4081 tcatcaggtg tcccatcaaa tgttccagaa gtttcagatc tcagcccagg gctggaccac
     4141 tctgatgctg ttctctaagt gtcacagggg accagcgacg gcctaggttg acaacctctg
     4201 tcagacagtc tgtgtttcga ccagagacgt ccctctggta tgaggcagtg aggactgaga
     4261 acaagaagct agagggtgct gagaggctct tcacaggtct cttggcacag gtctggaact
     4321 tgtcttcagt gcacgaaagg tggcccagaa ggaaggaaga ctcaagacca taagaggcag
     4381 cctggcctcc atgcctatgg agactgtcgc tgctcaagat tcgttggctg agaactgctt
     4441 gagagtctct gctggcccct cattattcag gaacacacac acacacgcac acacacacac
     4501 acacacacac acacacacac catctgctac agcaacaaaa aggatggtaa gctgtggcat
     4561 tattaattaa agatgatatc cagcctccaa a
//
